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jalview.git
2009-06-08
jprocter
apply gpl development license
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2009-06-08
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minor optimization. apply gpl development license
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2009-06-08
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patch for wierd format header lines and apply gpl devel...
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2009-06-08
jprocter
ga in 2.4.0b2 release
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2009-06-08
jprocter
nousagestats cli
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2009-06-08
jprocter
apply gpl development license and new donotobfuscate...
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2009-06-04
jprocter
full reference added.
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2009-06-04
jprocter
spelling
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2009-06-04
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script goes at beginning of body to allow linkthrus...
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2009-06-02
jprocter
update minor version of release branch
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2009-06-01
jprocter
graduated feature colour documentation
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2009-06-01
jprocter
GA appender script
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2009-06-01
jprocter
google tracking for index document
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2009-06-01
jprocter
more graduated feature support
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2009-06-01
jprocter
properly export graduated colour features
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2009-06-01
jprocter
prototype function for relabelling treenodes with diffe...
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2009-06-01
jprocter
better tooltip placement in alignment window
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2009-06-01
jprocter
added graduated colourscheme support for feature file
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2009-06-01
jprocter
better decoupling of data loading routines for AJAX
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2009-06-01
jprocter
first experiment with GA application use tracking
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2009-06-01
jprocter
look in database references for more ID strings to...
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2009-06-01
jprocter
apply method for a NodeTransform to nodes in a tree
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2009-06-01
jprocter
javadoc
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2009-06-01
jprocter
only make a link menu when there are links
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2009-06-01
jprocter
maxcolour is default colour for no-score features
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2009-04-14
jprocter
bugfix autobuild of release branch
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2009-04-14
jprocter
bugfix autobuild of release branch
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2009-04-14
jprocter
patch to fix occasional arrayoutofbounds exception...
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2009-04-07
jprocter
documented fix to sequencefetcher for multiple ID retrieval
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2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
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2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
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2009-03-31
jprocter
note on new popup menu in feature settings dialog
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2009-03-31
jprocter
added feature gradient colours and sortby feature score...
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2009-03-31
jprocter
prototype for store/restore of feature colour gradient...
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2009-03-31
jprocter
todo
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2009-03-17
jprocter
allow configuration of graduated colour
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2009-03-17
jprocter
quantitative shading of features by GraduatedColor
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2009-03-17
jprocter
prototype dialog for setting feature display shading...
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2009-03-17
jprocter
holds shading and range parameters rendering a feature...
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2009-03-17
jprocter
sortbytree view setting and action added - setting...
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2009-03-17
jprocter
sortbytree/nosortbytree and defprop arguments. (defprop...
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2009-03-17
jprocter
new sortbytree default config property
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2009-03-17
jprocter
sortbytree parameter added and undo re-instated for...
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2009-03-17
jprocter
fixes launchApp bug where user defined colourscheme...
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2009-02-24
jprocter
better tooltip display and placement, cope with linkOnl...
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2009-02-24
jprocter
debugging selection message send/receive
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2009-02-24
jprocter
only display unique url links (both in label and in...
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2009-02-24
jprocter
bugfix for occasional nullpointer exceptions when selec...
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2009-02-24
jprocter
change method signature to allow caller to test if...
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2009-02-24
jprocter
bugfix the bugfix
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2009-02-24
jprocter
allow label to be set independently of parsed input...
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2009-02-24
jprocter
bug fixes (infinite loop when fetcher given same sequen...
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2009-02-06
jprocter
updated jalview reference
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2009-02-06
jprocter
updated binding
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2009-02-06
jprocter
fix occasional nullpointer ref when seq ID retrieval...
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2009-02-06
jprocter
showUnconserved and updated reference
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2009-02-06
jprocter
showunconserved preference
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2009-02-06
jprocter
showUnconserved group attribute
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2009-02-06
jprocter
showUnconserved IO
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2009-02-06
jprocter
showUnconserved view and group setting
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2009-02-06
jprocter
show unconserved gui and annotation file attribute
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2009-02-06
jprocter
added showUnconserved property to group and view attributes
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2009-01-09
jprocter
hack to completely disable calculation of consensus...
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2009-01-09
jprocter
bugfix
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2009-01-08
jprocter
fix broken parsing of non-positional features in GFF...
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2009-01-08
jprocter
structure ids are not IDs, but simply references
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2009-01-08
jprocter
refactor
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2009-01-07
jprocter
added links to the das settings help, and explanation...
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2009-01-07
jprocter
ensure that the DAS sequence source checkbox is checked...
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2009-01-07
jprocter
check for features on the retrieved sequences
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2009-01-07
jprocter
refactor
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2009-01-07
jprocter
added higher level method to enable the display of...
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2008-12-19
jprocter
justify cannot be undone - commented out menu items...
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2008-12-19
jprocter
experimental: sort by feature UI in feature settings...
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2008-12-19
jprocter
new sort by length method, justify edit menu entries...
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2008-12-19
jprocter
catch null pointer exception when no colourscheme is...
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2008-12-19
jprocter
simple transformation of feature types like dbref and...
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2008-12-19
jprocter
todo
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2008-12-19
jprocter
wsdbfetch parameter change again (uniprotkb is dbname...
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2008-12-19
jprocter
avoid null pointer exception when no features visible
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2008-12-19
jprocter
avoid null pointer exception when groupName is not set
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2008-12-19
jprocter
left and right justify method
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2008-12-19
jprocter
sort by length
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2008-12-15
jprocter
added (and enabled) switch to store gff source string...
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2008-12-15
jprocter
temporary fix and note about null feature group mucking...
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2008-12-15
jprocter
warning for failed parsing of newick strings
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2008-12-15
jprocter
new callback handler allowing threads that request...
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2008-12-15
jprocter
structureState element to structure view Id is a many...
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2008-12-08
jprocter
DAS feature scores are parsed into floats on sequence...
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2008-12-08
jprocter
output average score to stdout
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2008-12-08
jprocter
display feature score in tooltip
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2008-12-08
jprocter
order by feature documentation
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2008-12-08
jprocter
experimental buttons for sort on score/density and...
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2008-12-08
jprocter
new sort functions for ordering sequence by annotated...
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2008-12-05
jprocter
added location of menu option and keystroke
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2008-12-05
jprocter
support for multiple accession retrieval from a databas...
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2008-12-04
jprocter
added local das sequence source CLI and documentation
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2008-12-04
jprocter
fetch database references for all EBI db + selected...
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2008-12-04
jprocter
sequence fetchers generated for local das sequence...
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2008-12-04
jprocter
das source browser uses local source method from jalvie...
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