jalview.git
2007-05-08 amwaterhouseMore issues resolved
2007-05-08 amwaterhouseinstant update when seq colour is pressed
2007-05-08 amwaterhousemust specify .CA
2007-05-08 amwaterhouseremove system.out
2007-05-08 amwaterhousesmall sphere for alpha carbon
2007-05-08 amwaterhouseaddElement
2007-05-08 amwaterhousemirror image recitified
2007-05-07 amwaterhouse2.3 updates
2007-05-07 amwaterhouse2.3 updates
2007-05-07 amwaterhouseCan compile and obfuscate applet with Jmol
2007-05-07 amwaterhouseImage size must allow for scale height
2007-05-07 amwaterhousedif is never used
2007-05-07 amwaterhouseAllow for large font sizes
2007-05-07 amwaterhousedont use gold highlights
2007-05-07 amwaterhouseMax width for tooltip
2007-05-07 amwaterhousestill trying to prevent null painting
2007-05-07 amwaterhouseUse id hash to add pdb mappings back to alignment
2007-05-07 amwaterhousetIndex prevented deletion of last annotation
2007-05-07 amwaterhouseDont use gold colouring for highlight
2007-05-07 amwaterhouseUse PDB id for grouping mappings
2007-05-07 amwaterhousePDBViewer available if necessary
2007-05-04 amwaterhouseCheck bounds of loaded comp
2007-05-04 amwaterhouseremove system.out
2007-05-04 amwaterhouseadded
2007-05-04 amwaterhouseAdd dbrefs before zero length features
2007-05-04 amwaterhouselastCommand check
2007-05-04 amwaterhouseRename AppJMol to AppJmol - also AppJmol works with...
2007-05-04 amwaterhouseRenamed to AppJmol
2007-05-04 amwaterhouseNew example file for version 2.3
2007-05-04 amwaterhouseNew example file for version 2.3
2007-05-04 amwaterhouseSplash screen is not added using normal method, prevent...
2007-05-04 amwaterhouseAnnotations do not extend when full alignment is adjusted
2007-05-03 amwaterhousepdb id toUpperCase
2007-05-03 amwaterhouseoptimize repaints
2007-05-03 amwaterhouseremove system.out
2007-05-02 jprocterfeature locations are retrieved by associated accession...
2007-05-02 jprocterfeature locations are retrieved by associated accession...
2007-05-02 jprocterpublic debug report log message to gather any cases...
2007-05-02 jprocterfixed getIntervals bug to ensure it returns range from...
2007-05-02 jprocterdocumentation and proxy call to util.MapList.getToWord...
2007-05-02 jprocterextractScores menu item disabled for release
2007-05-02 jprocteronly return non-empty subsequences when getting selecti...
2007-05-02 amwaterhouseAllow expansion of textarea for many sequence input
2007-05-02 amwaterhouseAMSA input set padgaps true
2007-05-02 amwaterhouseconvert space to gapchar
2007-05-02 jprocterundo stackempty error fix, refactored do and undo(...
2007-05-02 jprocterrefactored do and undo() method to take array of alignm...
2007-05-02 jproctercopy only the sequence associated alignment annotation...
2007-05-02 jproctersubsequence bound checks and constructor for selectivel...
2007-05-02 jprocterreturn flag indicating if annotations were actually...
2007-05-02 jprocterchecks for negative start column in restrict
2007-05-02 amwaterhousePadgaps is false by default
2007-05-01 amwaterhousesetVisible flag sent to EditNameDialog
2007-05-01 amwaterhousePad gaps method
2007-05-01 amwaterhouseMake sure annots are alignment width
2007-05-01 amwaterhouseuse jalviewLite to addFrame
2007-05-01 amwaterhouseremove system.out
2007-05-01 amwaterhouseset chains available
2007-05-01 amwaterhouseMultiple views/hidden region/undo out of index bug
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-05-01 jprocterjavadoc
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec...
2007-05-01 jproctersort-by-score works of sequence-annotation, not alignme...
2007-05-01 amwaterhouseSave seqset properties
2007-05-01 amwaterhouseSeqset properties saved
2007-05-01 jprocter2.3 what's new
2007-05-01 jprocterpreliminary EMBL and mapping documentation
2007-04-30 jprocter'no sources selected' calls method on feature settings...
2007-04-30 jprocterfixed deadlock
2007-04-30 amwaterhousesetVisible replaces show
2007-04-30 amwaterhouseVersion 11.0.2
2007-04-30 amwaterhouseREmoved
2007-04-30 jprocterrebuild sort by scores menu when new annotation is...
2007-04-30 jprocterpad should leave null annotations array null
2007-04-30 jprocterconvenient creation of 'score only' annotation.
2007-04-30 jprocterparse alignment properties and add annotation rows...
2007-04-30 jprocteralignment properties and embedded newick strings can...
2007-04-30 jprocterdssp 7-state to three state lookup
2007-04-30 jprocterjavadoc
2007-04-27 amwaterhouseremove excessive painting
2007-04-27 amwaterhouseREmove excessive painting
2007-04-27 amwaterhouseRepaint after feature added
2007-04-27 amwaterhousePrevent err when editing and overview drawing
2007-04-27 amwaterhouseFeatureRenderer mixups fixed
2007-04-27 amwaterhouseRemove system.out AppletPDBViewer.java
2007-04-27 amwaterhouseCheck pdbid size >0
2007-04-27 amwaterhouseTrouble with featureRenderers fixed
2007-04-27 amwaterhouseMove repaint in thread
2007-04-27 amwaterhousePut alignmentProperties in scrollpane
2007-04-27 amwaterhouseCheck feature group is visible for mouse over features
2007-04-27 amwaterhouseremove System.out
2007-04-27 amwaterhouseAdd param to Jmol path
2007-04-27 amwaterhousepadGaps moved
2007-04-27 amwaterhouseMake sure mainContainer and owner are not null
2007-04-27 amwaterhouseMust check that featureGroup is visible for mouse over...
2007-04-27 amwaterhouseamendFeatures
2007-04-27 amwaterhousepaintAlignment(true)
2007-04-27 amwaterhousePlace new feature on top of existing features
2007-04-27 amwaterhouseMake sure sequence is in mouse over alignment
2007-04-27 amwaterhouseAmend Features
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