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jalview.git
2011-08-23
jprocter
JAL-715 - allow rest service attributes to be exported...
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2011-08-21
janengelhardt
JAL-913; Extending documentation; VARNA help;
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2011-08-19
janengelhardt
JAL-913; Documentation of RNA Structure Conservation
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2011-08-19
jprocter
JAL-908 JAL-912 JAL-516 documented annotation HTML...
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2011-08-19
jprocter
JAL-908,JAL-701 - patch applet to strip HTML tags from...
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2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
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2011-08-18
jprocter
testdata for JAL-701 and JAL-908
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2011-08-18
jprocter
remove debug message
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2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
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2011-08-18
jprocter
minor efficiency refactor
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2011-08-18
jprocter
JAL-907 testdata for JAL-701
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2011-08-18
jprocter
JAL-907 - test data directory readme
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2011-08-17
jprocter
JAL-853 use service action attribute to index services...
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2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
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2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
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2011-08-17
jprocter
fix for JAL-888
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2011-08-17
jprocter
fix for JAL-888
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2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
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2011-08-17
jprocter
JAL-813 fix - check whether conservation is applied...
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2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
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2011-08-16
janengelhardt
JAL-842; Text element containing the structure is not...
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2011-08-15
janengelhardt
JAL-891; Tooltips for Structure logos implemented;
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2011-08-15
janengelhardt
JAL-878; Structures associated to a sequence are availa...
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2011-08-15
jprocter
JAL-750 automaticScrolling is true by default
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2011-08-15
jprocter
JAL-750 - automaticScrolling=true by default. Refactore...
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2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
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2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
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2011-08-15
janengelhardt
JAL-891; Labeling of structure conservation is improved...
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2011-08-15
janengelhardt
JAL-891; Sorting of Structure logo implemented; bug...
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2011-08-11
jprocter
avoid NPE for null annotation element columns JAL-896
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2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
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2011-08-10
janengelhardt
JAL-885; Structure conservation row is just added if...
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2011-08-09
janengelhardt
JAL-891; base-pair logos can now be activated for structure
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2011-08-08
janengelhardt
JAL-891; structure logo is adapted to two char's; Missi...
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2011-08-08
janengelhardt
JAL-891; sequence logos are available on structure...
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2011-08-05
jprocter
example script that will submit a muscle jabaws job...
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2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
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2011-08-05
jprocter
allow several progress bars on the desktop window ...
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2011-08-04
jprocter
JAL-896 - patch to ensure arrows in different direction...
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2011-08-04
jprocter
JAL-883 - refactored and debugged arrow, stem and helix...
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2011-08-03
jprocter
Merge branch 'master' of https://source.jalview.org...
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2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
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2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
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2011-08-03
jprocter
fix NPE when applets stop. seems to make the simple...
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2011-08-03
janengelhardt
JAL-885; Multi-helix bug is solved; One should think...
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2011-08-03
jprocter
refactor schema to group swing window geometry attributes
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2011-07-31
janengelhardt
JAL-885; StructureConservation row is displayed at...
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2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
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2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
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2011-07-26
jprocter
example alignment for JAL-862 - removed signal peptides
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2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
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2011-07-25
janengelhardt
some print statements to test things
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2011-07-25
janengelhardt
JAL-882; VARNA crashed when non-standard gaps where...
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2011-07-25
janengelhardt
JAL-878; Additional structures with a 'GR' tag in Stock...
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2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
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2011-07-25
janengelhardt
JAL-842; Implement transmitting of Jalview Sequence...
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2011-07-25
janengelhardt
JAL-842: some bugfixes;
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2011-07-25
janengelhardt
JAL-842; Added the TextField to edit structure in VARNA
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2011-07-25
janengelhardt
JAL-842; trimming single structures for single sequence...
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2011-07-25
janengelhardt
JAL-842; Give Varna frames name for window organizer...
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2011-07-25
janengelhardt
Varna external frame bug solved
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2011-07-25
janengelhardt
Reorganize the class structure, unfortunately breaks...
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2011-07-25
janengelhardt
clean code
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2011-07-25
janengelhardt
Further structure accessing feature
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2011-07-25
janengelhardt
Changed location of VARNAv3-8b.jar; small changes
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2011-07-25
janengelhardt
jal-842; sequence transmitting to Varna included
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2011-07-25
janengelhardt
JAL-842, AppVarnaBinding was filled with a minimalistic...
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2011-07-25
janengelhardt
JAL-842, Further creation of VARNA classes (probably...
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2011-07-25
janengelhardt
Container for VARNA classes are created according to...
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2011-07-25
janengelhardt
JAL-841; Structure trigger token in jalview.io.Alignmen...
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2011-07-25
janengelhardt
'Add doc for JalviewRNASupport what was done/todo'...
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2011-07-25
janengelhardt
'Help files updated with RNA stuff' merge; JAL-580
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2011-07-25
janengelhardt
'Fix Group Colour bug' merge; JAL-580
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2011-07-25
janengelhardt
'Update to Covariaton color scheme' merge; JAL-580
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2011-07-25
janengelhardt
'Add Rfam database sequence retrieval' merged; JAL-580
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2011-07-25
janengelhardt
Start merging of Laurens Code
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2011-07-25
janengelhardt
New branch created and author list changed to test...
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2011-07-22
jprocter
todo for JAL-860 - associate multiple sequences with...
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2011-07-22
jprocter
applet min/max annotation shading parameter documentati...
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2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
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2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
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2011-07-22
jprocter
code style
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2011-07-22
jprocter
default parameter for colours in annotation shading...
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2011-07-22
jprocter
method to get a user default colour (JAL-234)
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2011-07-21
jprocter
retrieve all sequences matching a particular name ...
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2011-07-21
jprocter
local instance of deployJava script from Sun/Oracle
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2011-07-21
jprocter
refined applet example on examples page
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2011-07-21
jprocter
better layout and structure display on startup
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2011-07-21
jprocter
ensure contents of hash is extended JAL-876
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2011-07-18
jprocter
fixed mouseover problem - still need to deal with flick...
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2011-07-10
jprocter
progress when saving state (JAL-870) and hack to trap...
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2011-07-09
jprocter
documentation for menu item JAL-860
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2011-07-09
jprocter
menu item and constructor to open a bunch of structures...
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2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
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2011-07-09
jprocter
todo re JAL-732
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2011-07-09
jprocter
JAL-868 todo
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2011-07-08
jprocter
open each query result from an alignment datasource...
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2011-07-07
jprocter
comment re JAL-153
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2011-07-07
jprocter
Set job title correctly and pass reason why
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