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jalview.git
2007-10-04 jprocterrefactored invertColumnSelection as an object method commit | commitdiff | tree | snapshot
2007-10-02 jprocteradded colSel as a parameter formatAdaptor print functio... commit | commitdiff | tree | snapshot
2007-10-02 jprocterconvenience constructor for duplicating an annotation... commit | commitdiff | tree | snapshot
2007-10-02 jprocterjavadoc and operator for editing AlignmentAnnotation... commit | commitdiff | tree | snapshot
2007-10-02 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-09-29 jprocteralways update PDBEntry list if DBRefEntries might have... commit | commitdiff | tree | snapshot
2007-09-29 jprocterupdatePDBEntry method to add any PDBEntry from the... commit | commitdiff | tree | snapshot
2007-09-29 jprocteruse pdb refsource string commit | commitdiff | tree | snapshot
2007-09-29 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-09-29 jprocterfriendlier sequence names for protein products commit | commitdiff | tree | snapshot
2007-09-28 jprocterbetter support for TreeNode binding commit | commitdiff | tree | snapshot
2007-09-28 jprocterjavadoc for jalview_properties tags commit | commitdiff | tree | snapshot
2007-09-27 jprocterswitched to apache zip tool for doc IO commit | commitdiff | tree | snapshot
2007-09-27 jproctermodifiable lock check commit | commitdiff | tree | snapshot
2007-09-25 jprocterascii file commit | commitdiff | tree | snapshot
2007-09-25 jprocterbeginning of vamsas/local object synchronization patter... commit | commitdiff | tree | snapshot
2007-09-25 jprocteradded store of undo/redo hash for each alignment so... commit | commitdiff | tree | snapshot
2007-09-25 jprocterprimitive methods for getting current undo/redo state... commit | commitdiff | tree | snapshot
2007-09-18 jprocterfix class-cast exception and added beginnings of DBRef... commit | commitdiff | tree | snapshot
2007-09-18 jprocterpathological vamsas archive update fix ? commit | commitdiff | tree | snapshot
2007-09-14 jprocterascii file commit | commitdiff | tree | snapshot
2007-09-14 jprocteradded support for loading a vamsas document into a... commit | commitdiff | tree | snapshot
2007-09-14 jprocterbetter reproduction of compact newick files (removal... commit | commitdiff | tree | snapshot
2007-09-10 jprocterchoose a particular vamsas session, load, or create... commit | commitdiff | tree | snapshot
2007-09-10 jprocterensure dbrefs are added to dataset sequence. commit | commitdiff | tree | snapshot
2007-09-07 jprocterclient update to fix appData read triggering document... commit | commitdiff | tree | snapshot
2007-09-07 jprocterformatting and ensure that dataset is actually searched... commit | commitdiff | tree | snapshot
2007-09-07 jprocteradded action for saving the current session as a vamsas... commit | commitdiff | tree | snapshot
2007-09-07 jprocterMaps are usually added to DbRefs which are added to... commit | commitdiff | tree | snapshot
2007-09-07 jprocteradded a more general DBRef search interface commit | commitdiff | tree | snapshot
2007-09-06 jprocterbootstrap regex 'fixed' and ugly hack to try and get... commit | commitdiff | tree | snapshot
2007-09-06 jprocterargs for emblfile parser main method commit | commitdiff | tree | snapshot
2007-09-06 jprocterfixes bootstrap bug noted by Chunlong Chen in email... commit | commitdiff | tree | snapshot
2007-09-04 jprocterremoved href in the jnlp generation commit | commitdiff | tree | snapshot
2007-09-04 jprocterbasic fix for pfelkers problem with ':' in the last... commit | commitdiff | tree | snapshot
2007-09-04 jproctergff parsing when no start or end position is defined. commit | commitdiff | tree | snapshot
2007-08-31 jprocteradded CSV export of annotation rows to application. commit | commitdiff | tree | snapshot
2007-08-31 jprocterappdata bugfix in vamsas client library commit | commitdiff | tree | snapshot
2007-08-30 jprocter*really* make sure database references are stored and... commit | commitdiff | tree | snapshot
2007-08-30 jprocterensure codon mappings and database references are merge... commit | commitdiff | tree | snapshot
2007-08-30 jproctersequenceMappings go on boh datasets involved in a mappi... commit | commitdiff | tree | snapshot
2007-08-30 jprocterrefactored and ensured alCodonMappings are propagated... commit | commitdiff | tree | snapshot
2007-08-30 jprocterstore dataset references, sequence dataset ids, and... commit | commitdiff | tree | snapshot
2007-08-30 jprocterimproved vamsas treenode node binding support commit | commitdiff | tree | snapshot
2007-08-30 jproctermoved dataset sequence creation onto sequence method commit | commitdiff | tree | snapshot
2007-08-30 jproctercreate dataset sequence method commit | commitdiff | tree | snapshot
2007-08-30 jprocterremoved autogenerated todo commit | commitdiff | tree | snapshot
2007-08-30 jprocterupdated source generation for castor-1.1-cycle patched commit | commitdiff | tree | snapshot
2007-08-30 jprocteradded aligned codon frames, and dataset reference ids... commit | commitdiff | tree | snapshot
2007-08-29 jprocterapplet and application menu entry differences and conse... commit | commitdiff | tree | snapshot
2007-08-24 jprocterdataset alignments have a reference count which must... commit | commitdiff | tree | snapshot
2007-08-24 jprocterremove null pointer exception when embl file is not... commit | commitdiff | tree | snapshot
2007-08-24 jproctertodo comments commit | commitdiff | tree | snapshot
2007-08-23 jprocterproper vamsas style binding of alignment sequence objec... commit | commitdiff | tree | snapshot
2007-08-23 jprocterslightly faster validation patch (logging message conca... commit | commitdiff | tree | snapshot
2007-08-23 jprocterbugfixed and removed some inefficiencies in marshalling commit | commitdiff | tree | snapshot
2007-08-22 jprocterpopup for non-fatal tree parsing error commit | commitdiff | tree | snapshot
2007-08-22 jprocterquick fix for exceptions due to invalid embl refs commit | commitdiff | tree | snapshot
2007-08-22 jprocterfix serious repetitive exceptions if user closes colour... commit | commitdiff | tree | snapshot
2007-08-22 jproctercatch occasional -ve imgWidth exception commit | commitdiff | tree | snapshot
2007-08-22 jprocteradded failsafe fix for cases where null sequence names... commit | commitdiff | tree | snapshot
2007-08-22 jprocterintroduce beginning of bug fix for parsing atv style... commit | commitdiff | tree | snapshot
2007-08-22 jprocteradded facility for sending non-fatal warnings back... commit | commitdiff | tree | snapshot
2007-08-13 jprocterfixed typo in new 2_3 startup file default value commit | commitdiff | tree | snapshot
2007-08-08 jproctergive treeviewer description its own contents entry... commit | commitdiff | tree | snapshot
2007-08-08 jproctergeneralise name of prediction method commit | commitdiff | tree | snapshot
2007-08-08 jprocterensure default source dist is relative to basedir of... commit | commitdiff | tree | snapshot
2007-08-08 jprocterallow source dist archive to be an absolute filename commit | commitdiff | tree | snapshot
2007-08-08 jprocteradded source-dist task commit | commitdiff | tree | snapshot
2007-08-08 jprocterhistidine should be midblue (noticed by Peter Knight... commit | commitdiff | tree | snapshot
2007-08-06 jproctercomment concerning null exceptions generated when annot... commit | commitdiff | tree | snapshot
2007-08-06 jprocternull pointer exception blocked redraw of annotation... commit | commitdiff | tree | snapshot
2007-08-02 jprocterjavadoc and bugfix for 'save' when jalview is default... commit | commitdiff | tree | snapshot
2007-08-02 jprocterupdated vamsas library (version for iscb demo) commit | commitdiff | tree | snapshot
2007-08-01 jprocterignore contents of this directory commit | commitdiff | tree | snapshot
2007-08-01 jprocteradded the '-tree' parameter to open a tree from the... commit | commitdiff | tree | snapshot
2007-08-01 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-08-01 jprocterensure current dataset reference is passed to the cross... commit | commitdiff | tree | snapshot
2007-08-01 jprocteradded tree as an applet to application servlet parameter commit | commitdiff | tree | snapshot
2007-08-01 jprocternull pointer exception bug fix commit | commitdiff | tree | snapshot
2007-07-31 jprocterdebugging cross references and duplicate sequence db... commit | commitdiff | tree | snapshot
2007-07-30 jproctertest cc change revoked. commit | commitdiff | tree | snapshot
2007-07-30 jproctertest cc commit | commitdiff | tree | snapshot
2007-07-30 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-07-30 jprocterproperty for including debug info in classes commit | commitdiff | tree | snapshot
2007-07-25 jproctertodo comment commit | commitdiff | tree | snapshot
2007-07-25 jprocterfix crossRef retrieval so either protein OR nucleotide commit | commitdiff | tree | snapshot
2007-07-25 jprocteruniprot synonym commit | commitdiff | tree | snapshot
2007-07-25 jprocterbetter vamsas tree io (for when there are no nodemappings) commit | commitdiff | tree | snapshot
2007-07-25 jprocterbugfix for vamsas demo commit | commitdiff | tree | snapshot
2007-07-25 jprocterIO rearrangement for AMSAFile output commit | commitdiff | tree | snapshot
2007-07-25 jprocterbugfix for vamsas demo and IO rearrangement for AMSAFil... commit | commitdiff | tree | snapshot
2007-07-13 jprocterignore random stuff to do with eclipse commit | commitdiff | tree | snapshot
2007-07-13 jprocterpreliminary IO classes - read javadoc for purpose commit | commitdiff | tree | snapshot
2007-07-13 jprocterpickmanager on sequence and alignment position, vamsas... commit | commitdiff | tree | snapshot
2007-07-13 jprocterrefactor commit | commitdiff | tree | snapshot
2007-07-13 jprocternew DBRef management and generalised source and entry... commit | commitdiff | tree | snapshot
2007-07-13 jproctermore semantic groupings of dbs commit | commitdiff | tree | snapshot
2007-07-13 jprocterdebugged mappings and translated sequence recovery commit | commitdiff | tree | snapshot
2007-07-13 jprocterpreliminary states for pca distribution io commit | commitdiff | tree | snapshot
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