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2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview commit | commitdiff | tree | snapshot
2017-10-12 kiramtJAL-2759 working first pass cursor commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tests updated for revised label width commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2742 set HiddenColumns null for no hidden coluns... commit | commitdiff | tree | snapshot
2017-10-11 Jim ProcterJAL-2757 release notes commit | commitdiff | tree | snapshot
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into... commit | commitdiff | tree | snapshot
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 minor test updates following review commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars commit | commitdiff | tree | snapshot
2017-10-11 kiramtJAL-2609attemptedmerge tidy commit | commitdiff | tree | snapshot
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2690attemptedmerge seems to work commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLate... commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2392 formatting commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterJAL-2523 release notes commit | commitdiff | tree | snapshot
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2690attemptedmerge partial merge commit | commitdiff | tree | snapshot
2017-10-10 kiramtJAL-2759 Rearranged iterators commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries commit | commitdiff | tree | snapshot
2017-10-09 gmungocJAL-2523 convenience method to get model organisms commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterMerge branch 'patch/JAL-2446_mergeconflictmissed' into... commit | commitdiff | tree | snapshot
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. commit | commitdiff | tree | snapshot
2017-10-09 kiramtJAL-2674 iterator updates commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterMerge branch 'patch/JAL-2116_java9_antjnlpfix' into... commit | commitdiff | tree | snapshot
2017-10-06 Jim ProcterJAL-2116 fix jnlp file post-processing so java 9 module... commit | commitdiff | tree | snapshot
2017-10-06 kiramtJAL-2674 Last moves to iterators commit | commitdiff | tree | snapshot
2017-10-06 kiramtJAL-2647 stashing commit | commitdiff | tree | snapshot
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response commit | commitdiff | tree | snapshot
2017-10-05 kiramtJAL-2674 Removed a stray Vector commit | commitdiff | tree | snapshot
2017-10-05 kiramtJAL-2674 Rationalising iterators and retesting commit | commitdiff | tree | snapshot
2017-10-04 kiramtJAL-2674 Adjustments to hideColumns commit | commitdiff | tree | snapshot
2017-10-04 gmungocJAL-2523 start of refactoring... commit | commitdiff | tree | snapshot
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence commit | commitdiff | tree | snapshot
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence commit | commitdiff | tree | snapshot
2017-10-04 kiramtJAL-2674 tidy commit | commitdiff | tree | snapshot
2017-10-03 kiramtJAL-2647 unit test commit | commitdiff | tree | snapshot
2017-10-03 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' into... commit | commitdiff | tree | snapshot
2017-10-03 kiramtJAL-2674 testing commit | commitdiff | tree | snapshot
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration commit | commitdiff | tree | snapshot
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing... commit | commitdiff | tree | snapshot
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology commit | commitdiff | tree | snapshot
2017-10-02 kiramtJAL-2674 iterator for visible blocks with absolute... commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterMerge branch 'documentation/JAL-2751patch2102b2' into... commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterJAL-2751 what's new for 2.10.2b2 patch commit | commitdiff | tree | snapshot
2017-10-01 Jim ProcterJAL-2751 patch release notes commit | commitdiff | tree | snapshot
2017-09-30 Jim ProcterJAL-2751 bump version and new releases entry commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 patch tests for https commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 formatting commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 patch tests for https commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2748 formatting commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org commit | commitdiff | tree | snapshot
2017-09-29 kiramtJAL-2674 Tidies commit | commitdiff | tree | snapshot
2017-09-29 kiramtJAL-2674 finish with iterators for now commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS" commit | commitdiff | tree | snapshot
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy commit | commitdiff | tree | snapshot
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... commit | commitdiff | tree | snapshot
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP... commit | commitdiff | tree | snapshot
2017-09-29 gmungocJAL-2745 update www.ebi.ac.uk to https commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https commit | commitdiff | tree | snapshot
2017-09-28 kiramtJAL-2647 more iterators commit | commitdiff | tree | snapshot
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame commit | commitdiff | tree | snapshot
2017-09-27 kiramtJAL-2674 Removing most calls to getHiddenColumnsCopy commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 tidied up CigarArray commit | commitdiff | tree | snapshot
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'... commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2742 uncomment test commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 uncomment test commit | commitdiff | tree | snapshot
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2742'... commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2742 fixed commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2742 CigarArray constructor unit test commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 Changed CigarArray constructor to use HiddenCo... commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 more List<int[]> -> HiddenColumns copy changes commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 Unit test for new copy constructor. commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 Changes to pasting commit | commitdiff | tree | snapshot
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2740'... commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2740 additional unit testing bug/JAL-2740 commit | commitdiff | tree | snapshot
2017-09-26 kiramtMerge remote-tracking branch 'origin/bug/JAL-2740'... commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2740 removed unwanted code, added unit test commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2674 HiddenColumns interface tidies commit | commitdiff | tree | snapshot
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench... commit | commitdiff | tree | snapshot
2017-09-25 gmungocJAL-2525 return no features if none matches ontology... commit | commitdiff | tree | snapshot
2017-09-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2739'... commit | commitdiff | tree | snapshot
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