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jalview.git
2011-09-14 jprocterJAL-934 - standard label font functions commit | commitdiff | tree | snapshot
2011-09-14 jprocterJAL-931 (related) - utility to split an alignment datab... commit | commitdiff | tree | snapshot
2011-09-14 jprocterJAL-931 - groovy test harness code. commit | commitdiff | tree | snapshot
2011-09-14 jproctertest data for JAL-701 commit | commitdiff | tree | snapshot
2011-09-14 jprocterpatch for NPE (not clear if NPE is evidence of deeper... commit | commitdiff | tree | snapshot
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... commit | commitdiff | tree | snapshot
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... commit | commitdiff | tree | snapshot
2011-09-14 jprocterfix for JAL-930 commit | commitdiff | tree | snapshot
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations... commit | commitdiff | tree | snapshot
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state... commit | commitdiff | tree | snapshot
2011-09-05 jprocternote about ensuring callers of loadAlignment(..) save... commit | commitdiff | tree | snapshot
2011-09-05 jprocterremoved old VARNA library commit | commitdiff | tree | snapshot
2011-08-30 jprocterpatch for JAL-731 commit | commitdiff | tree | snapshot
2011-08-30 jprocterpatch for JAL-729 - NPE avoided and cut and paste impor... commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-915 - ensured that exceptions are not raised in... commit | commitdiff | tree | snapshot
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made... commit | commitdiff | tree | snapshot
2011-08-30 jprocterfix for JAL-917 - ensure all sequence strings are made... commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 - conditional to hide the RSBS service editing... commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 rsbs service editing commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 JalviewDialog for RSBS service editing pane commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 store/reset .jalview_properties setting for... commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 serialise and deserialise multiple rest client... commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 - notify user of parsing problems for results... commit | commitdiff | tree | snapshot
2011-08-30 jprocterretrieve URL for datasource of packed set commit | commitdiff | tree | snapshot
2011-08-30 jprocterensure parsing errors and 'lack of data' errors are... commit | commitdiff | tree | snapshot
2011-08-30 jprocterJAL-715 need to URLencode constant values when serializ... commit | commitdiff | tree | snapshot
2011-08-29 jprocterJAL-715 - grammar for warning message. commit | commitdiff | tree | snapshot
2011-08-29 jprocteradded notes on third party library licencing and update... commit | commitdiff | tree | snapshot
2011-08-29 jprocterJAL-919, JAL-715 - prototype service editing dialog... commit | commitdiff | tree | snapshot
2011-08-29 jprocterJAL-633, JAL-591 - refactored ArgumentI.getValue from... commit | commitdiff | tree | snapshot
2011-08-29 jprocterrefactored popup dialog boilerplate code to own class commit | commitdiff | tree | snapshot
2011-08-29 jprocterJAL-633 simple concrete parameter and option objects... commit | commitdiff | tree | snapshot
2011-08-29 jprocterJAL-633, JAL-591 - refactored ArgumentI.getValue from... commit | commitdiff | tree | snapshot
2011-08-28 janengelhardtIncluding of VARNAv-3.9; commit | commitdiff | tree | snapshot
2011-08-25 jprocterconstructor only needs GUI container interface commit | commitdiff | tree | snapshot
2011-08-25 jprocterJAL-591 - refactored web service parameter dialog to... commit | commitdiff | tree | snapshot
2011-08-25 jprocterJAL-715 - better validation logic commit | commitdiff | tree | snapshot
2011-08-25 jprocterdebug dialog commit | commitdiff | tree | snapshot
2011-08-25 jprocterJAL-715 - prevent empty elements being generated commit | commitdiff | tree | snapshot
2011-08-24 jprocterJAL-715 dialog for interactively editing a new or exist... commit | commitdiff | tree | snapshot
2011-08-24 jprocternew Swing and SWT capable form layout manager - miglayout commit | commitdiff | tree | snapshot
2011-08-24 jprocterJAL-715 bugfixes and refactor of parsing code for use... commit | commitdiff | tree | snapshot
2011-08-24 jprocterrefactor labelled button creator to JvSwingUtils commit | commitdiff | tree | snapshot
2011-08-23 jprocterJAL-715 - simple tests and functions for IO of service... commit | commitdiff | tree | snapshot
2011-08-23 jprocterJAL-715 - allow rest service attributes to be exported... commit | commitdiff | tree | snapshot
2011-08-21 janengelhardtJAL-913; Extending documentation; VARNA help; commit | commitdiff | tree | snapshot
2011-08-19 janengelhardtJAL-913; Documentation of RNA Structure Conservation commit | commitdiff | tree | snapshot
2011-08-19 jprocterJAL-908 JAL-912 JAL-516 documented annotation HTML... commit | commitdiff | tree | snapshot
2011-08-19 jprocterJAL-908,JAL-701 - patch applet to strip HTML tags from... commit | commitdiff | tree | snapshot
2011-08-19 jprocterJAL-908 JAL-701 refactored HTML escape/unescape code... commit | commitdiff | tree | snapshot
2011-08-18 jproctertestdata for JAL-701 and JAL-908 commit | commitdiff | tree | snapshot
2011-08-18 jprocterremove debug message commit | commitdiff | tree | snapshot
2011-08-18 jprocterfix for JAL-701 - ensure '<' appears in tooltip in... commit | commitdiff | tree | snapshot
2011-08-18 jprocterminor efficiency refactor commit | commitdiff | tree | snapshot
2011-08-18 jprocterJAL-907 testdata for JAL-701 commit | commitdiff | tree | snapshot
2011-08-18 jprocterJAL-907 - test data directory readme commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-853 use service action attribute to index services... commit | commitdiff | tree | snapshot
2011-08-17 jprocterremove any trailing '/' from the URL before validation... commit | commitdiff | tree | snapshot
2011-08-17 jprocteravoid NPE race condition when several threads waiting... commit | commitdiff | tree | snapshot
2011-08-17 jprocterfix for JAL-888 commit | commitdiff | tree | snapshot
2011-08-17 jprocterfix for JAL-888 commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-898 - ensure we only remove a clargs progress bar... commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied... commit | commitdiff | tree | snapshot
2011-08-17 jprocterJAL-867 - rejigged layout to a single splitpane wide... commit | commitdiff | tree | snapshot
2011-08-16 janengelhardtJAL-842; Text element containing the structure is not... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Tooltips for Structure logos implemented; commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-878; Structures associated to a sequence are availa... commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-750 automaticScrolling is true by default commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-750 - automaticScrolling=true by default. Refactore... commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-747 - warning dialog if Jalview can't resolve filen... commit | commitdiff | tree | snapshot
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Labeling of structure conservation is improved... commit | commitdiff | tree | snapshot
2011-08-15 janengelhardtJAL-891; Sorting of Structure logo implemented; bug... commit | commitdiff | tree | snapshot
2011-08-11 jprocteravoid NPE for null annotation element columns JAL-896 commit | commitdiff | tree | snapshot
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... commit | commitdiff | tree | snapshot
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if... commit | commitdiff | tree | snapshot
2011-08-09 janengelhardtJAL-891; base-pair logos can now be activated for structure commit | commitdiff | tree | snapshot
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi... commit | commitdiff | tree | snapshot
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure... commit | commitdiff | tree | snapshot
2011-08-05 jprocterexample script that will submit a muscle jabaws job... commit | commitdiff | tree | snapshot
2011-08-05 jprocterfetch groovy script from URL (JAL-899) and show progres... commit | commitdiff | tree | snapshot
2011-08-05 jprocterallow several progress bars on the desktop window ... commit | commitdiff | tree | snapshot
2011-08-04 jprocterJAL-896 - patch to ensure arrows in different direction... commit | commitdiff | tree | snapshot
2011-08-04 jprocterJAL-883 - refactored and debugged arrow, stem and helix... commit | commitdiff | tree | snapshot
2011-08-03 jprocterMerge branch 'master' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... commit | commitdiff | tree | snapshot
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour... commit | commitdiff | tree | snapshot
2011-08-03 jprocterfix NPE when applets stop. seems to make the simple... commit | commitdiff | tree | snapshot
2011-08-03 janengelhardtJAL-885; Multi-helix bug is solved; One should think... commit | commitdiff | tree | snapshot
2011-08-03 jprocterrefactor schema to group swing window geometry attributes commit | commitdiff | tree | snapshot
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at... commit | commitdiff | tree | snapshot
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... commit | commitdiff | tree | snapshot
2011-07-28 jprocterrefer to local default setting for proxy when connecting to commit | commitdiff | tree | snapshot
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl... commit | commitdiff | tree | snapshot
2011-07-26 jprocterexample alignment for JAL-862 - removed signal peptides commit | commitdiff | tree | snapshot
2011-07-25 jprocteruse proper encoding for storing colour as user preferen... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtsome print statements to test things commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-882; VARNA crashed when non-standard gaps where... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock... commit | commitdiff | tree | snapshot
2011-07-25 janengelhardtJAL-842; toy example to insert nucleotides in sequences... commit | commitdiff | tree | snapshot
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