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jalview.git
2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
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2006-08-15
amwaterhouse
Move features to dataset
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2006-08-14
amwaterhouse
Stockholm parser added
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2006-08-14
amwaterhouse
Stockholm parser
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2006-08-14
jprocter
refactored to create generic polling thread and subjobs
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2006-08-14
amwaterhouse
2.1 updates
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2006-08-14
jprocter
function to indicate job has finished but no results...
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2006-08-14
amwaterhouse
New file
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2006-08-14
amwaterhouse
new feature added
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2006-08-14
amwaterhouse
Stop loading must be before JOptionPane, 1.5 bug
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2006-08-14
amwaterhouse
No need to check selection group size
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2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
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2006-08-14
amwaterhouse
Do a loop for multiple seq matches
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2006-08-14
amwaterhouse
Correct test string
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2006-08-14
jprocter
multiple subjobs can be cancelled and gui only allows...
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2006-08-14
jprocter
fixed off by one bug in end sequence from getSubSequenc...
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2006-08-14
amwaterhouse
findingFeatures flag set
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2006-08-14
amwaterhouse
2.1 updates
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2006-08-14
amwaterhouse
2.1 updates
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2006-08-14
amwaterhouse
2.1 new files
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2006-08-14
amwaterhouse
Replaced image
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2006-08-14
amwaterhouse
Merged with edit
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2006-08-14
jprocter
end<start for empty sequences in Sequence[] from SeqCigar[]
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2006-08-14
amwaterhouse
elementAt instead of get for 1.1 compatibility
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2006-08-14
jprocter
fixing residue clip bug in MsaWSThread and adding minim...
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2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
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2006-08-11
jprocter
multiple web service jobs from visible blocks of an...
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2006-08-11
amwaterhouse
Update overview on conservation/pid slider mouseRelease
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2006-08-11
amwaterhouse
alignpanel.repaint
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2006-08-11
amwaterhouse
Add links menu if no sequence is selected
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2006-08-11
amwaterhouse
popup must be added to panel before showing
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2006-08-11
amwaterhouse
param tree replaces treeFile
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2006-08-11
amwaterhouse
2.1 updates
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2006-08-11
amwaterhouse
2.1 updates
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2006-08-11
amwaterhouse
2.1 updates
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2006-08-11
amwaterhouse
2.1 updates
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commitdiff
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2006-08-11
amwaterhouse
2.1 updates
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commitdiff
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snapshot
2006-08-11
amwaterhouse
2.1 updates
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commitdiff
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snapshot
2006-08-11
amwaterhouse
2.1 updates
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commitdiff
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2006-08-11
amwaterhouse
2.1 updates
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2006-08-11
amwaterhouse
2.1 updates
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2006-08-11
amwaterhouse
new files
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2006-08-11
amwaterhouse
dud file
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2006-08-11
amwaterhouse
Desktop is null if -noDisplay is set
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2006-08-11
amwaterhouse
Make a new FeatureRenderer
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2006-08-11
amwaterhouse
AlignPanel.repaint
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2006-08-11
amwaterhouse
Printstacktrace
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2006-08-11
amwaterhouse
inFile might be null if PDB was pasted
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2006-08-10
amwaterhouse
Smoother drawing
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2006-08-10
amwaterhouse
Check selection size before making tree
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2006-08-10
amwaterhouse
group.getSize should be ab.alignment.getGroups
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2006-08-10
amwaterhouse
Check alAndColSel are not null
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2006-08-10
amwaterhouse
Control and shift for col selection
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2006-08-10
amwaterhouse
Reset button added
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2006-08-10
amwaterhouse
Right mouse works with cursor mode
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2006-08-10
amwaterhouse
Only add 1 feature settings table
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2006-08-10
amwaterhouse
Comment out start and end refs
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2006-08-10
amwaterhouse
1.1 compatible
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2006-08-10
amwaterhouse
file: is a URL
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2006-08-10
amwaterhouse
Invert column selection
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2006-08-09
jprocter
new SequenceI method for making a sub sequence from...
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2006-08-09
jprocter
alignment from seqCigars will correctly mark deleted...
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2006-08-09
jprocter
refactored hidden regions methods and made an Alignment...
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2006-08-09
jprocter
fixed multiple shifts bug.
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2006-08-09
amwaterhouse
Must save all the feature settings
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2006-08-09
amwaterhouse
Check if groups have already been added or not
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2006-08-09
amwaterhouse
Fix for local sources with no capabilities
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2006-08-09
amwaterhouse
Icon drawing updated
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2006-08-09
amwaterhouse
Null hidden cols check
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2006-08-09
amwaterhouse
No need to re repaint
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2006-08-09
amwaterhouse
Height and info message
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2006-08-09
amwaterhouse
Transparency
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2006-08-09
amwaterhouse
Endres check for wrap alignment
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2006-08-09
amwaterhouse
Set the start res and start seq
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2006-08-09
amwaterhouse
Copy hidden cols to new alignment
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2006-08-09
amwaterhouse
Remove system.out
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2006-08-09
amwaterhouse
Make sure link menu is displayed
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2006-08-09
amwaterhouse
Save links and scores and keyValues for features
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2006-08-09
amwaterhouse
KeyValue pairs for features
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2006-08-08
amwaterhouse
Input Data...
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2006-08-08
amwaterhouse
Capitals
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2006-08-08
amwaterhouse
Out by 1 error on show columns
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2006-08-08
amwaterhouse
Applet has hidden regions
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2006-08-08
jprocter
removed extraneous classes.
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2006-08-08
jprocter
locally modified biojava-dasobert package is now org...
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2006-08-07
amwaterhouse
Use idCanvas highlight system
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2006-08-07
amwaterhouse
1.1 compatible
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2006-08-07
amwaterhouse
Use idCanvas highlight system
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2006-08-07
amwaterhouse
1.1 compatible
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2006-08-07
amwaterhouse
Set wrapped mode even if false
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2006-08-07
amwaterhouse
catch out of memory error for consensus when loading...
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2006-08-07
jprocter
added commented out seqStrings comment.
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2006-08-04
jprocter
recover original data for tree and pca as alignment...
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2006-07-28
amwaterhouse
Show reveal all menu
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2006-07-28
amwaterhouse
findSeq in SeqPanel is used
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2006-07-28
amwaterhouse
Resize image if id width changes
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2006-07-28
amwaterhouse
No need for count
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2006-07-28
amwaterhouse
Resize inactive when mouse exited and no dragEvent
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2006-07-28
amwaterhouse
getIndex replaced with findSeq in seqPanel
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2006-07-28
amwaterhouse
Remove system.out
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