| 2006-10-25 |
amwaterhouse | We can delete sequence 0 |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Return if negative width, ie alignment deleted |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Check hiddenSequence before placing in tmp |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Get sequence in routine |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | viewport.hasHiddenColumns updated after undo/redo performed |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | EditCommand added to AlignFrame |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Adjusts columnSelection correctly |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Adjusts hiddenColumns correctly |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | more accelerators |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Only send one call per sequence at the moment |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | ShowConservation, quality, identity not used |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Must set alignIndex before delete takes place |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Use EditCommand.Cut |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | HistoryItem replaced by CommandI |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | EditCommand implemented |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | must translate graphics back the same amountcvs diff... |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Change Case is undoable |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | SequenceIndex might be beyond old height |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Must catch image outOfMemoryError |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | changeCase, removeGaps moved to commands package |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Uses RemoveGapsCommand |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Remove variables not used |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Remove unneccessary import |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Make everything final |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | New accelerators |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Commented out for compilation |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | setOrder is public |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Commands which can be done, or undone |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Its historycvs remove jalview/datamodel/HistoryItem... |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
jprocter | fixes bug reported by Christopher Tan (help@jalview... |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Wait for response from server before next sequence |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | showqual, showcons never used |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | remove html and body from tooltip |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | new feature args |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Can set description for new features |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Faded anntotations when recalculating |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | set conserve and quality null if outofmemory |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | No longer a FeatureListener |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | parseDescriptionHTML |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | draw text after linkimage |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Remove system.out |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Gerneral XML parse error |
commit | commitdiff | tree | snapshot |
| 2006-10-15 |
jprocter | fixed array out of bounds exception in copy constructor |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | showQuality may be updated during archive file load |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Convenient function findEndRes |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Add features from Popupmenu |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Overview may request index beyond alignment height |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Use i, not index if not representedSeqs |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | If conservation is null, disable Blosum62 and conservat... |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Annotasiont[j] might be null |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Local adjustForhiddenSeqs routine |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | RepresentGroup count items |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Null element checked |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | HiddenSequences now array, not hashtable |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Comment out debug to compile applet |
commit | commitdiff | tree | snapshot |
| 2006-10-11 |
jprocter | fixes exception (array index out of bounds - due to... |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
jprocter | refined id matching to pick the closest match (by lengt... |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
jprocter | debug message bugfix on duplicate tree leaf names. |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | No need to find index when deleting |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Calculate alWidth earlier |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Remove growing hashtable |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Check on null consensus |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
jprocter | bugfix for dodgy trees which contain the same leafname... |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Must repaint whole alignPanel |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | MaxResidue must be at least 2 |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Remove unneccessary separator |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Only getGroups once if groupEditingcvs update |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | 1.1 compatible |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Use AAFrequency final keys |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | SetTooltip empty |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Optimized |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | aaIndex replaces aaHash |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | static final strings for consensus keys |
commit | commitdiff | tree | snapshot |
| 2006-10-10 |
amwaterhouse | Consensus and conservation updated in threads |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | fixed log4j complaints for vamsas logging (again) |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | fixed log4j complaints for vamsas logging. |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | excluded log4j properties. |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | java 1.4 compliant classes. |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | imported Vamsas bindings and alpha vamsas client code... |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | set firstColumn property for an alignmentView object. |
commit | commitdiff | tree | snapshot |
| 2006-10-09 |
jprocter | fixed getCompactAlignment method to return proper cigar... |
commit | commitdiff | tree | snapshot |
| 2006-10-06 |
jprocter | Added filter so that input to a JPred job is *solely... |
commit | commitdiff | tree | snapshot |
| 2006-10-06 |
jprocter | javadoc |
commit | commitdiff | tree | snapshot |
| 2006-10-06 |
jprocter | new getVisibleContigs method mirrors the getVisibleCont... |
commit | commitdiff | tree | snapshot |
| 2006-10-06 |
amwaterhouse | AAFrequency optimized |
commit | commitdiff | tree | snapshot |
| 2006-10-06 |
amwaterhouse | Set consensus as hashtble[] |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | Multiple Views |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | BatchSize now 10 |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | OutOfMemoryError test |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | TabbedPanes for views |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | lower case available |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | AlignFrame must take width and height |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | Sequenceset may be empty, multiple views |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | DEFAULT_WIDTH |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | Viewname, sequencesetid, gatheredViews |
commit | commitdiff | tree | snapshot |
| 2006-10-05 |
amwaterhouse | Sequences are optionalcvs diff vamsas.xsd |
commit | commitdiff | tree | snapshot |
| 2006-10-03 |
amwaterhouse | Check annotation is editable |
commit | commitdiff | tree | snapshot |
| 2006-10-03 |
amwaterhouse | Send DAS requests in batches of 20 |
commit | commitdiff | tree | snapshot |
| 2006-10-03 |
amwaterhouse | DB seqs may be lower or upper case |
commit | commitdiff | tree | snapshot |
| next |
git://source.jalview.org / jalview.git / shortlog