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jalview.git
2011-06-24
jprocter
fix to preserve sequence numbering in MSF (JAL-847)
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2011-06-23
jprocter
jmb isn't created yet, so use another SSM provider
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2011-06-23
jprocter
patch for JAL-846 made targetChain mapping constraint...
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2011-05-30
jprocter
bug for clients using NJTree directly - pwtype should...
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2011-05-30
jprocter
first patch for JAL-838 - allow new typed of PID calcs
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2011-05-19
jprocter
example applet and desktop application files that shoul...
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2011-05-19
jprocter
example applet and desktop application files that shoul...
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2011-05-19
jprocter
Revert "just a test"
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2011-05-18
jprocter
just a test
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2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
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2011-05-17
jprocter
interface for objects at root of a jalview session's
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2011-05-17
jprocter
interface for handlers of alignmentViewPanel events
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2011-05-17
jprocter
cruisecontrol again
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2011-05-17
jprocter
another cc test
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2011-05-17
jprocter
Merge branch 'master' of https://source.jalview.org...
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2011-05-17
jprocter
test cruisecontrol
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2011-05-17
jprocter
test cruisecontrol
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2011-05-17
jprocter
ensure all colour statements added to string set
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2011-05-05
jprocter
uncommentable debug message for JAL-771
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2011-05-05
jprocter
html tags
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2011-05-05
jprocter
improved javascript callback execution thread and provi...
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2011-05-05
jprocter
separation of jmol script command generation from jmol...
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2011-05-05
jprocter
javadoc and informative error message when external...
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2011-05-05
jprocter
ensure feature renderer settings come from the given...
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2011-05-05
jprocter
added simple stdout debug function
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2011-04-25
jprocter
JAL-824 - additional methods to allow jmol colouring...
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2011-04-25
jprocter
JAL-824 - patch to schema to allow jmol colouring state...
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2011-04-25
jprocter
toggle of inclusion/exclusion of views for colouring...
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2011-04-25
jprocter
JAL-824 - ensure Jmol colouring is a radio button
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2011-04-25
jprocter
documentation for JAL-824 and JAL-621
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2011-04-25
jprocter
documentation for JAL-732
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2011-04-25
jprocter
htmlfix
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2011-04-22
jprocter
formatting
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2011-04-22
jprocter
removed useless flag (was always null for button press...
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2011-04-22
jprocter
JAL-823 and JAL-824 - seqColour no longer the default...
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2011-04-22
jprocter
comments re JAL-823 legacy issue
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2011-04-22
jprocter
clarify tooltip
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2011-04-22
jprocter
moved loadingFromArchive flag modification to after...
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2011-04-22
jprocter
option for enabling Jmol colouring mode JAL-824
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2011-04-21
jprocter
JAL-641 patch
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2011-04-21
jprocter
patch for JAL-733
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2011-04-21
jprocter
patch for JAL-820 and JAL-821
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2011-04-21
jprocter
separated alignment annotation height calculation from...
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2011-04-21
jprocter
moved to same place as in jalview.gui
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2011-04-21
jprocter
save and recover graph height, visibility and row posit...
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2011-04-21
jprocter
allow an alignment annotation row to be removed and...
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2011-04-21
jprocter
allow an existing alignment annotation row to be bound...
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2011-04-21
jprocter
added graphHeight attribute to schema (JAL-784)
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2011-04-19
jprocter
avoid race condition when featureRenderer for structure...
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2011-04-19
jprocter
patched XML parser to ensure it properly escapes non...
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2011-04-08
jprocter
todo
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2011-04-08
jprocter
imported properties via -props should never be overwritten
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2011-04-08
jprocter
allow groovy scripts to be run when in headless mode...
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2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
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2011-04-07
jprocter
allow groovy scripts to be run when in headless mode...
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2011-04-07
jprocter
resolves JAL-805
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2011-04-07
jprocter
resolves JAL-804
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2011-02-28
jprocter
excess imports
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2011-02-27
jprocter
patch for JAL-780
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2011-02-27
jprocter
patch for occasional ArrayIndexOutOfBounds
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2011-02-27
jprocter
patch for JAL-792
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2011-02-27
jprocter
first patch for JAL-774 - ensure end is a valid bound...
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2011-02-25
jprocter
first approximation for JAL-782 - hint that opaque...
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2011-02-18
jprocter
JAL-777/JAL-641 debugging
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2011-02-18
jprocter
new alignmentPanel api + JAL-777/JAL-641 debugging
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2011-02-18
jprocter
fix scrolltoposition behaviour and new alignmentPanel api
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2011-02-18
jprocter
fix scrolltoposition behaviour
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2011-02-18
jprocter
JAL-574
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2011-02-18
jprocter
convenience method to discover all Jmols
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2011-02-18
jprocter
JAL-779 and some redraw refinements
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2011-02-18
jprocter
JAl-574
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2011-02-18
jprocter
avoid exceptions for orphaned windows
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2011-02-18
jprocter
bugfixing for JAL-778
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2011-02-18
jprocter
new multiple multiple view associations JAL-777
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2011-02-18
jprocter
call to release any explicit event handler references...
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2011-02-18
jprocter
dynamic alignmentPanel menu class
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2011-02-18
jprocter
call to release any explicit event handler references
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2011-02-18
jprocter
removed explicit 'linkedAlignmentPanel' flag
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2011-02-18
jprocter
fix for occasional race conditions
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2011-02-17
jprocter
fixes JAL-778 - flag to indicate binding between an...
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2011-02-17
jprocter
protype api
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2011-02-17
jprocter
classCast exception - attempting to update registry...
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2011-02-15
jprocter
fix for JAL-776
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2011-02-15
jprocter
fixes JAL-775
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2011-02-14
jprocter
JAL-769
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2011-02-14
jprocter
JAL-564 (annotation panel height adjustment) and alignm...
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2011-02-14
jprocter
JAL-621 (mouseover debugging) and JAL-564 (annotation...
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2011-02-14
jprocter
JAL-621 and JAL-564
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2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
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2011-02-14
jprocter
refactored annotation panel height calculation
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2011-02-14
jprocter
JAL-621 - also renamed list of javascript handlers
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2011-02-14
jprocter
javadoc
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2011-02-04
jprocter
Balascz reported problems - jalview tries to write...
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2011-02-04
jprocter
JAL-761
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2011-02-04
jprocter
1.2ish awt methods
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2011-02-04
jprocter
java 1.4.2 applet build
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2011-02-04
jprocter
1.2ish awt methods and excluding unused code
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2011-02-04
jprocter
don't need to retrieve idwidthadjuster
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2011-02-04
jprocter
javadoc
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2011-02-04
jprocter
patch for JAL-760
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