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jalview.git
2020-10-22 gmungocJAL-3763 Javadoc, check for null, additional tests task/JAL-3763_newDatasetForCds commit | commitdiff | tree | snapshot
2020-10-22 gmungocJAL-3751 only merge strictly contiguous ranges of mappings commit | commitdiff | tree | snapshot
2020-10-22 gmungocJAL-3763 test coverage for AlignedCodonFrame.markMapped... commit | commitdiff | tree | snapshot
2020-10-15 gmungocJAL-3763 unused method removed commit | commitdiff | tree | snapshot
2020-10-08 gmungocJAL-3700 JAL-3763 create datasets for test sequences commit | commitdiff | tree | snapshot
2020-10-08 gmungocJAL-3763 failsafe check for null commit | commitdiff | tree | snapshot
2020-10-08 gmungocJAL-3763 refactored getCoveringMapping for virtual... commit | commitdiff | tree | snapshot
2020-10-08 gmungocJAL-3763 always make a new dataset sequence for CDS... commit | commitdiff | tree | snapshot
2020-09-17 gmungocJAL-3700 additions and corrections to unit tests bug/JAL-3700_mapSequenceSelection commit | commitdiff | tree | snapshot
2020-08-05 gmungocJAL-3700 fix for propagation of sort commands commit | commitdiff | tree | snapshot
2020-08-03 gmungocJAL-3700 check for 'covering' mapping when matching... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... commit | commitdiff | tree | snapshot
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... commit | commitdiff | tree | snapshot
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,... commit | commitdiff | tree | snapshot
2020-07-07 gmungocJAL-1424 streamlined message checker, corrected applet... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-1424 slight tidying of reporting commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3518 Spanish text for 'write features' commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu... commit | commitdiff | tree | snapshot
2020-07-06 gmungocJAL-3570 updated external help links commit | commitdiff | tree | snapshot
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... commit | commitdiff | tree | snapshot
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all commit | commitdiff | tree | snapshot
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column... commit | commitdiff | tree | snapshot
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands commit | commitdiff | tree | snapshot
2020-06-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command commit | commitdiff | tree | snapshot
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer() commit | commitdiff | tree | snapshot
2020-06-28 gmungocJAL-3551 PyMOL command constants tidied commit | commitdiff | tree | snapshot
2020-06-28 gmungocJAL-3551 fit to window (zoom) command for PyMOL commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections... commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled commit | commitdiff | tree | snapshot
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... commit | commitdiff | tree | snapshot
2020-06-26 gmungocJAL-3518 tidy up asynchronous structure command execution commit | commitdiff | tree | snapshot
2020-06-25 gmungocJAL-2010 unused prototype method removed commit | commitdiff | tree | snapshot
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... commit | commitdiff | tree | snapshot
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... commit | commitdiff | tree | snapshot
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... commit | commitdiff | tree | snapshot
2020-06-08 soaresJAL-3446 new Jmol 15.1.3 jar added to j11lib, old j11li... commit | commitdiff | tree | snapshot
2020-06-04 Ben SoaresJAL-3225 Minor change to building.md for flexmark,... commit | commitdiff | tree | snapshot
2020-06-04 Ben SoaresJAL-3225 Removed dependency on command line pandoc... commit | commitdiff | tree | snapshot
2020-06-02 Ben SoaresJAL-3225 Using Gradle Git-Version plugin to set gitHash... commit | commitdiff | tree | snapshot
2020-06-02 soaresJAL-3225 small fixes for building within Eclipse commit | commitdiff | tree | snapshot
2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in... commit | commitdiff | tree | snapshot
2020-06-01 gmungocJAL-3518 test result corrected commit | commitdiff | tree | snapshot
2020-06-01 gmungocJAL-3518 add alwaysRun = true [sigh] commit | commitdiff | tree | snapshot
2020-06-01 gmungocJAL-3518 more test coverage for structure commands commit | commitdiff | tree | snapshot
2020-05-29 gmungocJAL-2422 test updated commit | commitdiff | tree | snapshot
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop commit | commitdiff | tree | snapshot
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-3551 corrected Pymol open session command commit | commitdiff | tree | snapshot
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands... commit | commitdiff | tree | snapshot
2020-05-27 Ben SoaresJAL-3541 ensure deletion of cloverReportDir commit | commitdiff | tree | snapshot
2020-05-27 Ben SoaresJAL-3541 small fix for clover.xml location expected... commit | commitdiff | tree | snapshot
2020-05-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2020-05-26 gmungocJAL-1889 disable test failing on build server commit | commitdiff | tree | snapshot
2020-05-26 soaresMerge branch 'bug/JAL-3541_cloverReport_gradle_task_fai... commit | commitdiff | tree | snapshot
2020-05-26 soaresJAL-3541 added a property/variable style comment to... bug/JAL-3541_cloverReport_gradle_task_fails commit | commitdiff | tree | snapshot
2020-05-26 gmungocJAL-3624 log when SIFTS mapping fails commit | commitdiff | tree | snapshot
2020-05-26 gmungocMerge branch 'feature/JAL-3624siftsInJS' into develop commit | commitdiff | tree | snapshot
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... commit | commitdiff | tree | snapshot
2020-05-25 soaresJAL-3541 selectively merged build.gradle and gradle... commit | commitdiff | tree | snapshot
2020-05-25 Jim ProcterJAL-3626 rescue automatic configuration of JALVIEW_VERS... commit | commitdiff | tree | snapshot
2020-05-24 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous... commit | commitdiff | tree | snapshot
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... commit | commitdiff | tree | snapshot
2020-05-21 gmungocJAL-2422 highlight ChimeraX selection (ChimeraX-1.0... commit | commitdiff | tree | snapshot
2020-05-20 gmungocJAL-3626 use Viewer.scriptWait() to send Jmol commands... commit | commitdiff | tree | snapshot
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test commit | commitdiff | tree | snapshot
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test commit | commitdiff | tree | snapshot
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol commit | commitdiff | tree | snapshot
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1 commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3529 test updated for revised signature of getDBRefs() commit | commitdiff | tree | snapshot
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop commit | commitdiff | tree | snapshot
2020-05-18 gmungocJAL-3613 remove debug code committed in error commit | commitdiff | tree | snapshot
2020-05-15 gmungocJAL-2422 JAL-3551 unit tests updated for code changes commit | commitdiff | tree | snapshot
2020-05-15 gmungocJAL-3619 default silently to Jmol if viewerType absent... commit | commitdiff | tree | snapshot
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class commit | commitdiff | tree | snapshot
2020-05-15 gmungocMerge branch 'feature/JAL-3551Pymol' into feature/JAL... commit | commitdiff | tree | snapshot
2020-05-15 gmungocJAL-3551 raise label on ('highlight') structure residue... commit | commitdiff | tree | snapshot
2020-05-15 Ben SoaresJAL-3541 Fixed report path for build artifacts commit | commitdiff | tree | snapshot
2020-05-14 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting commit | commitdiff | tree | snapshot
2020-05-14 Ben SoaresJAL-3541 Individual tests now instrumented and reported... commit | commitdiff | tree | snapshot
2020-05-12 Ben SoaresJAL-3541 Helpers for running tests, and other commands... commit | commitdiff | tree | snapshot
2020-05-12 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor... commit | commitdiff | tree | snapshot
2020-05-12 gmungocJAL-3518 tidy method, remove obsolete comment commit | commitdiff | tree | snapshot
2020-05-12 gmungocJAL-3518 failsafe check for null Jmol filename while... commit | commitdiff | tree | snapshot
2020-05-11 gmungocJAL-3551 concatenate colour by sequence commands for... commit | commitdiff | tree | snapshot
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... commit | commitdiff | tree | snapshot
2020-05-11 gmungocJAL-2422 ChimeraX paths (versions up to 1.0) added... commit | commitdiff | tree | snapshot
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