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2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterMerge branch 'release/2_9_documentation' into develop commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen... commit | commitdiff | tree | snapshot
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu... commit | commitdiff | tree | snapshot
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 formatting tree distance docs commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1483 more explicit description of feature similarit... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1483 description of the sequence feature based... commit | commitdiff | tree | snapshot
2015-09-09 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-09 tcofoegbuupdated Biojs msa help doc commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-1541 doc for biojs msa commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 Merge branch 'release/2_9_documentation' into... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 defictionalising release notes commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 first stab at R2.9 “What’s new” commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 JAL-1701 fix up split frame docs and add a... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 incorrect internal doc link commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9 commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated biojson help content commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated helpTOC to include recently added features... commit | commitdiff | tree | snapshot
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs) commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated help to include BioJS option in export.html commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1551 crlf change commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 draft release notes for v2.9... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar! commit | commitdiff | tree | snapshot
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbudeleted jbake example directory and the old biojs templ... commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... commit | commitdiff | tree | snapshot
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1522 report commit id and branch in installation... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1701 added links to example files. will probably... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1368 JAL-1863 JAL-1304 reformatting and revision... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1368 JAL-1628 revise documentation in line with... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterMerge branch 'bugfix/JAL-841_JAL-1081' into develop commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1805 move misassigned test from Functional to Network commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... commit | commitdiff | tree | snapshot
2015-09-04 Jim ProcterJAL-1847 Merge branch 'thiago' into develop commit | commitdiff | tree | snapshot
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... commit | commitdiff | tree | snapshot
2015-09-04 tcofoegbuJAL-793 added ability to visualise raw BioJSON in the... commit | commitdiff | tree | snapshot
2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget commit | commitdiff | tree | snapshot
2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1551 source tidy commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge features/JAL-857_dynamic-example-files commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1859 JAL-857 house keeping commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1859 JAL-857 updated all reference of JmolApplet... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1861 disable the action buttons for 1500 millisec... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuanother merge from develop commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuupdated examples index page commit | commitdiff | tree | snapshot
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-857 increased callback timeout to accomodated apple... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... commit | commitdiff | tree | snapshot
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge from develop commit | commitdiff | tree | snapshot
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