jalview.git
2014-11-05 gmungocJAL-674 Prefences tweaks incl help documentation for...
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva...
2014-11-04 gmungocJAL-1152 help updates for Preferences
2014-11-04 gmungocJAL-1152 annotation sort algorithm optimisation
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation...
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into...
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation...
2014-11-03 Jim ProcterMerge branch 'features/ssFromPDBEntry' into develop
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation...
2014-11-03 Jim Procterfix for JAL-1579 create threshold object for annotation...
2014-11-03 Jim ProcterJAL-1578 test property accessors/copy constructor
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation...
2014-11-03 Jim ProcterJAL-1578 formatting and imports
2014-11-03 Jim ProcterJAL-674 peptide structure input so test is not dependen...
2014-11-03 Jim ProcterJAL-1551 formatting
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor...
2014-11-03 Jim Procterjavadoc
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal...
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check...
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat...
2014-10-30 Jim ProcterMerge branch 'develop' into features/ssFromPDBEntry
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi...
2014-10-30 Jim ProcterJAL-674 count number of annotation transferred in test
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates...
2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct...
2014-10-30 Jim ProcterJAL-674 return original and replacement sequences and...
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method
2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping...
2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record...
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour...
2014-10-30 Jim ProcterJAL-674 patch test to verify presence of annotation...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-10-30 gmungocJAL-1152 prototype of new Annotations menu with sort...
2014-10-30 Charles OfoegbuJAL-353 updated patch for undo successive remove redund...
2014-10-29 Charles OfoegbuJAL-353 updated patch for undo successive remove redund...
2014-10-29 Jim ProcterJAL-1264 JAL-674 test to exercise the AlignmentAnnotati...
2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure...
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit...
2014-10-28 gmungocMerge branch 'develop' of https://source.jalview.org...
2014-10-28 gmungocJAL-1264 refactor to add menu options to _both_ sequenc...
2014-10-28 Charles Ofoegbu2_8_2_Branch merge
2014-10-28 Charles OfoegbuJAL-353 undo for successive removal of redundant sequen...
2014-10-28 Charles OfoegbuJAL-1250 Redundancy removal bug fix for Applet version
2014-10-27 Jim ProcterMerge branch 'develop' into Release_2_8_2_Branch
2014-10-27 Jim ProcterMerge branch 'Release_2_8_2_Branch' into merge_r282_dev
2014-10-27 Charles OfoegbuUpdated RedundancyPanel.java to referesh the tree view...
2014-10-27 Charles OfoegbuPatch for redundancy removal
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into develop
2014-10-23 unknownJAL-1521 updated xerces to 2.11 along with xml-apis
2014-10-23 Jim ProcterJAL-1521 patch is to remove xerces from classpath....
2014-10-23 Jim ProcterJAL-1521 test to check registry is returning sources
2014-10-23 Jim Procterpatch fixes JAL-1558
2014-10-23 Jim ProcterJAL-1503 tag 2.8.1b1 hotfix - last in 2.8.1 line
2014-10-23 gmungocJAL-1264 new unit tests
2014-10-23 gmungocJAL-1264 further refactoring and tests
2014-10-22 gmungocJAL-1304 repositioned tab to correct example
2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
2014-10-21 Jim ProcterJAL-674 check for null vector before ...
2014-10-21 Jim ProcterMerge branch 'patch_sjf4j_typo' into develop
2014-10-21 Jim ProcterJAL-1216 update varna dependency string in jalviewLite...
2014-10-21 Jim ProcterMerge branch 'patch_sjf4j_typo' into develop
2014-10-21 Jim ProcterJWS-59 JAL-1216 patch broken InstallAnywhere build
2014-10-21 Jim ProcterMerge branch 'forpush/JAL-674_dssp' into develop
2014-10-21 Jim ProcterJAL-1551 reinstate missing import
2014-10-21 Jim ProcterJAL-674 initial implementation - only need to extract...
2014-10-21 Jim ProcterJAL-1551 crlf
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by...
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation...
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not...
2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines...
2014-10-21 Jim ProcterJAL-674 test for the test for presence of annotation...
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-674 patch for duplicate row bug
2014-10-21 Jim ProcterJAL-674 test for duplicate alignment annotation rows...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterJAL-674 patch to ensure existing annotation is properly...
2014-10-21 Jim ProcterJAL-674 test to ensure sequence and annotation on seque...
2014-10-21 Jim ProcterJAL-1551 source formatting
2014-10-21 Jim ProcterJAL-674 JAL-207 getTers for aligned sequences in datase...
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio...
2014-10-21 Jim ProcterJAL-1551 formatting
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations...
2014-10-21 Jim ProcterJAL-1551 crlf changes
2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL... features/JAL-1264_showHideAnnotations
2014-10-15 Jim ProcterMerge branch 'jims_crlf_hell_JAL-1551' of https://sourc...
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when...
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created...
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static
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