jalview.git
2024-05-21 Ben SoaresJAL-4409 Adjust usage of HttpUtils.equivalentJalviewURL...
2024-05-21 Ben SoaresJAL-4409 Make HttpUtils.equivalentJalviewUrlString...
2024-05-20 Ben SoaresJAL-4409 Also interpret jalviewX:// URIs in Jalview...
2024-05-20 Ben SoaresJAL-4397 Another fix on linux
2024-05-17 Ben SoaresJAL-4420 Add some debugging statements
2024-05-17 Ben SoaresJAL-4420 Tests for new FileUtils methods
2024-05-17 Ben SoaresJAL-4420 Allow preprocessing of arguments if they are...
2024-05-17 Ben SoaresJAL-4409 Checking getdown jars up to date
2024-05-17 Ben SoaresJAL-3409 Add newline back into Buffered Reader in getdo...
2024-05-17 Ben SoaresJAL-4409 corrected the umount of dmg to hdiutil detach...
2024-05-16 Ben SoaresJAL-4409 Added remote JVL files for Linux/Windows
2024-05-16 Ben SoaresJAL-4409 Added multiple file open to getdown. Added...
2024-05-16 Ben SoaresJAL-4409 Easier full install from source for macOS
2024-05-16 Ben SoaresJAL-4409 more places to check for jalviewd://
2024-05-15 Ben SoaresJAL-4397 IdWidth tests slightly less restrictive for...
2024-05-15 Ben SoaresJAL-4409 extra schemes now opening correctly in macos
2024-05-15 Ben SoaresJAL-4409 minor change for mac testing
2024-05-15 Ben SoaresJAL-4409 Updated getdown classes
2024-05-15 Ben SoaresJAL-4409 Refactoring to allow easier reuse of classes...
2024-05-14 Ben SoaresJAL-1054 JAL-4414 Tests for the HttpUtils redirect...
2024-05-14 Ben SoaresJAL-1054 Also recognise UnknownHostException as a file...
2024-05-14 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem...
2024-05-14 Ben SoaresJAL-4217 Upped the main testTask0 timeout to 15 minutes... improvement/JAL-4217_added_a_timeout_to_tests
2024-05-14 Ben SoaresJAL-1054 Tests for the HttpUtils redirection wrappers
2024-05-14 Ben SoaresMerge branch 'bug/JAL-4397_failing_idWidth_tests' into...
2024-05-14 Ben SoaresMerge branch 'develop' into bug/JAL-4397_failing_idWidt... bug/JAL-4397_failing_idWidth_tests
2024-05-14 Ben SoaresJAL-4414 Add a FileNotFoundException when identifying...
2024-05-14 Jim ProcterJAL-4356 fix release note
2024-05-14 Jim ProcterJAL-4356 set release date to Weds 15th May and update...
2024-05-13 Jim ProcterJAL-4356 JAL-518 JAL-4413 release notes
2024-05-13 Jim ProcterMerge branch 'features/JAL-518_justify_seqs_in_region...
2024-05-13 Ben SoaresJAL-1054 Fix wrappers for following http->https redirects
2024-05-13 Jim ProcterJAL-518 better test coverage and support for case prese... features/JAL-518_justify_seqs_in_region
2024-05-13 Jim ProcterJAL-518 failing test for case preservation on justify
2024-05-13 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem...
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se...
2024-05-13 Jim ProcterJAL-4413 timeouts Merge branch 'improvement/JAL-4217_ad...
2024-05-13 Ben SoaresJAL-4409 Fix some file extensions (including remove...
2024-05-13 Ben SoaresJAL-1054 Add wrappers for URL.openConnection(), URL...
2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_se...
2024-05-10 Ben SoaresJAL-4409 Add jalviewhttp and jalviewhttps schemes to...
2024-05-02 Ben SoaresJAL-4217 Sensible timeout for testTask0
2024-05-02 Ben SoaresJAL-4217 Added a timeout for testTasks. If timeout...
2024-04-27 Ben SoaresJAL-4397 Removed debugging statement
2024-04-26 Ben SoaresJAL-4397 Adjustments for macOS HiDPI
2024-04-26 Ben SoaresJAL-4397 Test all fixed on linux. Given leeway to...
2024-04-22 Ben SoaresJAL-4397 Allow some leeway in automatically calculated...
2024-04-18 Ben SoaresJAL-4397 fixed testresetIdWidth() test on macos
2024-01-23 James ProcterJAL-4356 release notes
2024-01-23 James ProcterJAL-4356 update release notes for 2.11.3.3
2024-01-23 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_export_wi...
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align...
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless...
2024-01-23 Ben SoaresJAL-4290 fixed tests
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4353_cannot_output_...
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2024-01-23 James ProcterJAL-4353 wait for files to be written fully before...
2024-01-23 James ProcterJAL-4353 singleThread all tests
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling...
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect...
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor...
2024-01-23 James ProcterMerge branch 'bug/JAL-4368_default_colourscheme_applied...
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch
2024-01-19 Ben SoaresJAL-4373 Fix Main-Class and other attribute settings...
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately
2023-12-19 Ben SoaresJAL-4290 Fixed one test
2023-12-18 Ben SoaresJAL-4290 not quite working tests
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main()
2023-12-15 Ben SoaresMerge branch 'bug/JAL-4290_headless_alignment_export_wi...
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings...
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more...
2023-12-15 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_figure_wi...
2023-12-15 James ProcterJAL-4290 new CommandsTest.headlessOrGuiImageOutputTest... bug/JAL-4290_headless_alignment_figure_with_sse
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to...
2023-12-14 James ProcterJAL-4356 update release notes
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before...
2023-12-14 James ProcterJAL-4217 singleThread all tests
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into...
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling
2023-12-12 Ben SoaresJAL-4353 bigger tighter test
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is...
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_...
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to...
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary...
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-12 James ProcterJAL-4353 failing test
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files...
2023-12-11 James ProcterJAL-4192 more specific info about versions needed
2023-12-06 Ben SoaresJAL-4353 re-used random color code
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal...
2023-12-06 James ProcterJAL-4356 bump RELEASE
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3...
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into...
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into...
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