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jalview.git
2015-06-22 gmungocJAL-893 upgrade to VARNAv3-93.jar commit | commitdiff | tree | snapshot
2015-06-19 gmungocJAL-892 check viewer is linked to alignment panel on... commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1270 test added commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1544 typos in comments commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from... commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-892 schema changes (rnaViewer) for save Varna to... commit | commitdiff | tree | snapshot
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds commit | commitdiff | tree | snapshot
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well commit | commitdiff | tree | snapshot
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports) commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 test demonstrating bug commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e... commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterMerge branch 'develop' into bug/JAL-1775 commit | commitdiff | tree | snapshot
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed commit | commitdiff | tree | snapshot
2015-06-15 Jim ProcterJAL-1775 fix broken test due to missing file (RF0031_un... commit | commitdiff | tree | snapshot
2015-06-15 tcofoegbuJAL-1641 clean up commit | commitdiff | tree | snapshot
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface commit | commitdiff | tree | snapshot
2015-06-15 tcofoegbuclean up commit | commitdiff | tree | snapshot
2015-06-12 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-06-12 tcofoegbuJAL-1627 removed extra spaces at end of tooltip commit | commitdiff | tree | snapshot
2015-06-12 tcofoegbuJAL-1641 refactor commit | commitdiff | tree | snapshot
2015-06-10 tcofoegbuupdated build.xml commit | commitdiff | tree | snapshot
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-10 gmungocMerge remote-tracking branch commit | commitdiff | tree | snapshot
2015-06-10 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-06-10 tcofoegbuJAL-1641 updated applet version commit | commitdiff | tree | snapshot
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... commit | commitdiff | tree | snapshot
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute commit | commitdiff | tree | snapshot
2015-06-09 tcofoegbumerge commit commit | commitdiff | tree | snapshot
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in... commit | commitdiff | tree | snapshot
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this... commit | commitdiff | tree | snapshot
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame... commit | commitdiff | tree | snapshot
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into... commit | commitdiff | tree | snapshot
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 Chimera command timeout increased to 5 secs... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ... commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1622 code tidy only, no functional change commit | commitdiff | tree | snapshot
2015-06-05 gmungocJAL-1749 correcting snafu in last commit commit | commitdiff | tree | snapshot
2015-06-04 gmungocClear status bar message when initialisation complete commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit) commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1544 spelling in javadoc only commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix) commit | commitdiff | tree | snapshot
2015-06-04 gmungoctoString method added to aid viewing in the debugger commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1270 testToString added commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window' commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the... commit | commitdiff | tree | snapshot
2015-06-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1757 match only first altloc CA in PDB structure... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1641 added some JSON libraries to appletlib commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuclean up commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1756 fix failed test as a result of runing the... commit | commitdiff | tree | snapshot
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1756 bug-fix commit | commitdiff | tree | snapshot
2015-06-04 tcofoegbuJAL-1641 updated json schema to make it more generic... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbufixed bug in build.xml commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 updated build.xml commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 updated examples/applets.html commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-02 tcofoegbuJAL-1641 applet build fix commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'features/JAL-1641_JSON-extension' into... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1641 remove all refs/imports from gui package commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'bug/JAL-1703_hint_select_by_annot' into... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1703 added tooltip hints to components of the Selec... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuMerge branch 'bug/JAL-1734_misleading-progress-bar... commit | commitdiff | tree | snapshot
2015-06-01 tcofoegbuJAL-1734 updated progress bar messages commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuJAL-1748 house keeping commit | commitdiff | tree | snapshot
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 declare field with interface type; check for... commit | commitdiff | tree | snapshot
2015-05-29 Jim ProcterMerge branch 'JAL-1755_npe_groupconsensus' into develop commit | commitdiff | tree | snapshot
2015-05-29 Jim ProcterJAL-1755 fix for NPE when setting up temporary variables commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 Junit for new class commit | commitdiff | tree | snapshot
2015-05-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-05-29 gmungocJAL-1753 duplicated code refactored to new class Progre... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuMerge branch 'bug/JAL-1748_extend-pdb-query-opt' into... commit | commitdiff | tree | snapshot
2015-05-29 tcofoegbuJAL-1748 and employ preprocessing routine when return... commit | commitdiff | tree | snapshot
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