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2017-06-24 gmungocJAL-1858 don't fastpaint highlights if wrapped format bug/JAL-1858fastPaintHighlights commit | commitdiff | tree | snapshot
2017-06-24 gmungocJAL-1858 refactored method to redraw previous/new highl... commit | commitdiff | tree | snapshot
2017-06-23 gmungocJAL-1858 handle hidden columns when computing region... commit | commitdiff | tree | snapshot
2017-06-23 gmungocJAL-1858 'fastPaint' of minimal region for highlights... commit | commitdiff | tree | snapshot
2017-06-22 gmungocJAL-2481 JAL-2593 JAL-2526 further optimisation of... commit | commitdiff | tree | snapshot
2017-06-22 gmungocJAL-2480 simpler and safer test to avoid adding duplicates commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2480 tidy generic initialisations, SequenceFeatures... commit | commitdiff | tree | snapshot
2017-06-21 gmungocJAL-2524 don't render up to a hidden marker beyond... commit | commitdiff | tree | snapshot
2017-06-20 gmungocJAL-2526 don't retain lastColumnPosition from an invali... commit | commitdiff | tree | snapshot
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... commit | commitdiff | tree | snapshot
2017-06-13 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror select/hide by annotation in split... commit | commitdiff | tree | snapshot
2017-06-12 gmungocJAL-2577 mirror hide/select columns by annotation acros... commit | commitdiff | tree | snapshot
2017-06-11 Jim ProcterJAL-2418 updated release branch/version and release... commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2480 tidy javadoc commit | commitdiff | tree | snapshot
2017-06-09 gmungocJAL-2593 avoid redundant rendering of co-located features commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 correct boundary conditions for sequence left... commit | commitdiff | tree | snapshot
2017-06-08 kiramtMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-08 kiramtJAL-2586 Clarification to URL link code bug/JAL-2586 commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 cache first/last residue column positions... commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 setStatusMessage avoid redundant findPosition... commit | commitdiff | tree | snapshot
2017-06-08 gmungocJAL-2526 reuse findIndex result if start==end commit | commitdiff | tree | snapshot
2017-06-07 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-06 gmungocJAL-2526 less stringent test for invalid cursor commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2590' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2590 patch for rendering eggnog trees with polytomi... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterJAL-2576 release notes commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2576' into develop commit | commitdiff | tree | snapshot
2017-06-05 Jim ProcterMerge branch 'bug/JAL-2586' into develop commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2586 Checkstyle flagged fix of unintended fall... commit | commitdiff | tree | snapshot
2017-06-05 gmungocJAL-2505 comments updated commit | commitdiff | tree | snapshot
2017-06-05 gmungocJAL-2480 remove redundant method, further test coverage commit | commitdiff | tree | snapshot
2017-06-05 gmungocJAL-2505 explicit (and final) contactFeature property commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'features/JAL-2526sequenceCursor' into commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor commit | commitdiff | tree | snapshot
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-05 kiramtJAL-2571 Missed (alwaysRun=true) for @BeforeMethod commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 updated docs commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 fixed broken asserts for SequenceI.getInsertio... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 ‘Hide Insertions’ now operates on selection... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2291 SequenceI.getInsertionsAsBits for convenient... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl... commit | commitdiff | tree | snapshot
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2578' into develop commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2577' into develop commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterMerge branch 'features/JAL-2228_featureSetCounts_minRan... commit | commitdiff | tree | snapshot
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-02 gmungocJAL-2526 additional tests for findPosition with/without... commit | commitdiff | tree | snapshot
2017-06-02 tcofoegbuJAL-2473 revised default minimum dimension for Alignmen... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterJAL-2228 always create zero score annotations, since... commit | commitdiff | tree | snapshot
2017-06-02 Jim ProcterJAL-2228 always set minimum for count to zero for annot... commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2576 Proposed fix bug/JAL-2576 commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 commit | commitdiff | tree | snapshot
2017-06-02 kiramtJAL-2578 Moved hidden columns reveal to before selectio... bug/JAL-2578 commit | commitdiff | tree | snapshot
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-06-01 gmungocJAL-2526 additional calls to sequenceChanged() after... commit | commitdiff | tree | snapshot
2017-06-01 gmungocJAL-2526 zapCursor() renamed sequenceChanged() commit | commitdiff | tree | snapshot
2017-06-01 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn commit | commitdiff | tree | snapshot
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... commit | commitdiff | tree | snapshot
2017-06-01 gmungocJAL-2563 JAL-2547 amended unit tests for amended setSta... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 release notes for JAL-2547, JAL-2563, JAL... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2398 - updated groovy script for direct field modif... commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 JAL-2563 release notes commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterJAL-2418 typo commit | commitdiff | tree | snapshot
2017-05-31 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-31 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-05-31 gmungocJAL-2483 JAL-2575 don't sort newly discovered features commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuJAL-2375 fix unit test to reflect improvement commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuFixed failing tests commit | commitdiff | tree | snapshot
2017-05-31 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1... commit | commitdiff | tree | snapshot
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement commit | commitdiff | tree | snapshot
2017-05-31 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly commit | commitdiff | tree | snapshot
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 commit | commitdiff | tree | snapshot
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by... commit | commitdiff | tree | snapshot
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... commit | commitdiff | tree | snapshot
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features... commit | commitdiff | tree | snapshot
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... commit | commitdiff | tree | snapshot
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