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jalview.git
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... commit | commitdiff | tree | snapshot
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1522 report commit id and branch in installation... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1701 added links to example files. will probably... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1368 JAL-1863 JAL-1304 reformatting and revision... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1368 JAL-1628 revise documentation in line with... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterMerge branch 'bugfix/JAL-841_JAL-1081' into develop commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1805 move misassigned test from Functional to Network commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... commit | commitdiff | tree | snapshot
2015-09-04 Jim ProcterJAL-1847 Merge branch 'thiago' into develop commit | commitdiff | tree | snapshot
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... commit | commitdiff | tree | snapshot
2015-09-04 tcofoegbuJAL-793 added ability to visualise raw BioJSON in the... commit | commitdiff | tree | snapshot
2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget commit | commitdiff | tree | snapshot
2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1551 source tidy commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1861 disable the action buttons for 1500 millisec... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not... commit | commitdiff | tree | snapshot
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... commit | commitdiff | tree | snapshot
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1835 updated documentation in preferences commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1740 migrated BioJSMSAViewer git repo to https... commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1805 JAL-1700 house keeping commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1739 reverted BioJSON schema to use one main versio... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1544 spelling commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1355 User error text externalised to message bundle commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1264 test made i18n robust commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override... commit | commitdiff | tree | snapshot
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1805 JAL-1782 added a draft documentation for TestN... commit | commitdiff | tree | snapshot
2015-09-02 Jim ProcterJAL-1853 add test to list for ant task commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1619 additions, standardised menu item symbols commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1681 mention of cDNA consensus added commit | commitdiff | tree | snapshot
2015-09-02 Jim ProcterJAL-535 todo: refactor logic to desktop controller... commit | commitdiff | tree | snapshot
2015-09-02 Jim ProcterJAL-1772 non-functional test added. not doing any more... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1673 new test to verify transferRESNUMFeatures() commit | commitdiff | tree | snapshot
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterMerge branch 'bug/JAL-1853_gapchar_output' into develop commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 add test to Functional group commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient... commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings commit | commitdiff | tree | snapshot
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst... commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 test origin of gapChar bug in AlignView method commit | commitdiff | tree | snapshot
2015-09-01 gmungocJAL-1693 split frame opened for get xrefs, translate... commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 test demonstrating bug commit | commitdiff | tree | snapshot
2015-09-01 gmungocJAL-1672 additional assertions added commit | commitdiff | tree | snapshot
2015-09-01 gmungocJAL-1355 user error message text externalised commit | commitdiff | tree | snapshot
2015-09-01 tcofoegbuJAL-1668 house keeping commit | commitdiff | tree | snapshot
2015-08-31 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-08-31 tcofoegbuJAL-1700 updated error handling with suggested improvem... commit | commitdiff | tree | snapshot
2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1270 comments added regarding required remote service commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1759 updated unit test for removal of trim on Atom... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1830 tests relocated to AlignViewportTest after... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1627 updated expected tooltip text in unit test commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1830 unit tests for removing (or not) mappings... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-845 compacting duplicated code commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1611 debug sysout suppressed commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1544 message label corrected commit | commitdiff | tree | snapshot
2015-08-27 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1701 help page for Split Frame view linked in commit | commitdiff | tree | snapshot
2015-08-27 Jim ProcterJAL-1844 adding more missing jars - jersey, other json... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1544 'Jalview' consistently capitalised commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-892 JAL-1764 Varna and Chimera also saved to projec... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-892 saved to project; external help link updated commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1727 added EBI mirror of DAS registry commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1596 JAL-1725 JAL-1588 updates for selection in... commit | commitdiff | tree | snapshot
2015-08-27 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-08-27 gmungocJAL-1725 restrict Jalview's Jetty server to localhost commit | commitdiff | tree | snapshot
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