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jalview.git
2021-09-17 gmungocJAL-1260 unit test for FileFormats updated for GenBank/ENA commit | commitdiff | tree | snapshot
2021-09-17 gmungocJAL-1260 file formats and IdentifyFile updates for... commit | commitdiff | tree | snapshot
2021-09-17 gmungocJAL-1260 refactored GenBank (and EMBL) flat file parser commit | commitdiff | tree | snapshot
2021-09-17 Jim ProcterJAL-1260 FileFormat entry for EMBL/GENBANK: TODO: creat... commit | commitdiff | tree | snapshot
2021-09-16 Ben SoaresJAL-3779 Added to documentation commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3779 apply properties to all groups with given... commit | commitdiff | tree | snapshot
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF... commit | commitdiff | tree | snapshot
2021-09-16 Ben SoaresJAL-3739 (combined) commits from feature/JAL-3739_useFo... commit | commitdiff | tree | snapshot
2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but... commit | commitdiff | tree | snapshot
2021-09-16 Jim ProcterJAL-3794 new test for recognition of protein or DNA... commit | commitdiff | tree | snapshot
2021-09-16 Ben SoaresJAL-3761 listToArray became rangeListToArray commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3761 more consistent parameter naming commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3761 helper method reinstated to avoid code duplication commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3761 locateInFrom/To revised with tests; unused... commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3761 extra check that VCF feature is fully mappable... commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3761 debugged and working (but not tidied) locateIn... commit | commitdiff | tree | snapshot
2021-09-16 Ben SoaresJAL-3761 listToArray became rangeListToArray commit | commitdiff | tree | snapshot
2021-09-16 gmungocJAL-3761 locateInFrom2 work in progress commit commit | commitdiff | tree | snapshot
2021-09-15 gmungocJAL-3761 unit test for MapList.countPos() commit | commitdiff | tree | snapshot
2021-09-15 gmungocJAL-3761 failing test, formatting, method renamed commit | commitdiff | tree | snapshot
2021-09-15 gmungocJAL-3761 failing tests for locateInFrom/To with overlap... commit | commitdiff | tree | snapshot
2021-09-15 gmungocJAL-3751 only merge strictly contiguous ranges of mappings commit | commitdiff | tree | snapshot
2021-09-15 gmungocJAL-3788 synchronize concurrent findColour() and alignm... commit | commitdiff | tree | snapshot
2021-09-15 Ben SoaresJAL-3818 formatting commit | commitdiff | tree | snapshot
2021-09-15 gmungocJAL-3818 process Jmol callbacks in AWT thread commit | commitdiff | tree | snapshot
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 commit | commitdiff | tree | snapshot
2021-09-15 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2021-09-15 Ben SoaresJAL-3829 Fixed Jmol jar -- duplicates of other classes... commit | commitdiff | tree | snapshot
2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverride... commit | commitdiff | tree | snapshot
2021-09-15 Ben SoaresMerge branch 'develop' into merge/develop_ben2 commit | commitdiff | tree | snapshot
2021-09-15 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3815 default /etc/jalview_properties under utils... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 parallel not welcome here commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 test flakiness and human flakiness commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 more info on test fail - seems to be flaky commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresJAL-3521 Adjusted wrapper shell script and .desktop... commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresJAL-3521 High quality file icons for jalview associated... commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3551 - doc tweak commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 JAL-3855 ignore case when detecting alphafold ID commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3855 detect an alphafold model and import its tempe... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 move mock query and responses to files commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresJAL-2422 Also look in ~/Applications for ChimeraX on... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterMerge branch 'feature/JAL-2422ChimeraX' into develop commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 3d-beacons doesn’t work as a sequence source... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 avoid sending rubbish to PDBe search api commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 some providers don’t provide model quality... commit | commitdiff | tree | snapshot
2021-09-14 Jim ProcterJAL-3829 allow multiple URL mocks and include P01308... commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of... commit | commitdiff | tree | snapshot
2021-09-14 Ben SoaresJAL-2422 Fixed URL encoding of REST calls (broken paths... commit | commitdiff | tree | snapshot
2021-09-13 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2021-09-13 Ben SoaresJAL-2422 Fixed URL encoding of REST calls (broken paths... commit | commitdiff | tree | snapshot
2021-09-13 Ben SoaresMerge branch 'develop' into feature/JAL-2422ChimeraX commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterMerge branch 'releases/Release_2_11_2_Branch' into... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterJAL-3829 ensure unmock the FTS PDB and TDB clients... commit | commitdiff | tree | snapshot
2021-09-13 Ben SoaresJAL-2422 Added linux rpm and deb install locations... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterJAL-3829 minimal test of additional TDB filters - not... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select... commit | commitdiff | tree | snapshot
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches commit | commitdiff | tree | snapshot
2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to... commit | commitdiff | tree | snapshot
2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper excep... commit | commitdiff | tree | snapshot
2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri... commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 point at production 3d-beacons url commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab... commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures... commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 JAL-3868 TODO commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 formatting commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 integration test verifying mock response is... commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata... commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 look up column in FTS data commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to Unipro... commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 pull out structure chooser query source tests... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 JAL-3865 test structure chooser queries to... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 use sequence dependent constructor for structu... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... commit | commitdiff | tree | snapshot
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... commit | commitdiff | tree | snapshot
2021-09-02 Jim ProcterMerge branch 'cherry-pick/r2_11_2_JAL-3509' into develop commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff | tree | snapshot
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