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jalview.git
2019-03-01
gmungoc
Merge branch 'bug/JAL-3161annotationTooltipRange' into...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3158selectionBroadcasts' into...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3164complementOverview' into...
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2019-03-01
gmungoc
Merge branch 'merge/JAL-3140' into develop
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2019-03-01
gmungoc
JAL-3140 update for change to SequenceI api
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2019-03-01
gmungoc
Merge branch 'feature/intervalStoreJ' into merge/JAL...
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2019-03-01
gmungoc
JAL-3140 reduced coupling to intervalstore.jar
feature/intervalStoreJ
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2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datam...
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2019-02-28
gmungoc
Merge branch 'bug/JAL-2420revealAllMenu' into develop
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2019-02-28
gmungoc
Merge branch 'bug/JAL-3166npeAllRowsHidden' into develop
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2019-02-28
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into...
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2019-02-28
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2019-02-28
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into merge...
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2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
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2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
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2019-02-28
gmungoc
JAL-3032 any url parameter not "j2s..." taken as Jalvie...
Jalview-BH/JAL-3026-JAL-3063-JAXB
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2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
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2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
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2019-02-27
gmungoc
JAL-3202 reduced scope of rendering flags
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2019-02-27
gmungoc
JAL-3202 discard zero percentages in extracted profile
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2019-02-26
gmungoc
JAL-3201 JAL-2386 don't pre-select 'apply to all groups'
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2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
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2019-02-25
gmungoc
JAL-3032 Jalview (as JS) parse query params to main...
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2019-02-25
gmungoc
JAL-3032 JalviewJS2 converts url query parameters to...
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2019-02-25
gmungoc
JAL-3200 fast lookup of DSSP3 notation
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2019-02-24
gmungoc
JAL-3198 don't recalculate group conservation for Id...
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2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
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2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
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2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
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2019-02-22
Ben Soares
JAL-3141 improved message for asking whether to delete...
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2019-02-21
Ben Soares
JAL-3141 Sensible refactoring for confirming deleting...
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2019-02-17
Ben Soares
JAL-3141 User warning when deleting old backup files...
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2019-02-15
Ben Soares
JAL-3141 re-order deletion of old files and check lastM...
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2019-02-14
Ben Soares
JAL-3141 Added warning/confirmation when suffixReverse...
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2019-02-14
Ben Soares
JAL-3141 Moved 'Previously saved scheme' combo box...
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2019-02-12
gmungoc
JAL-3032 default Autosearch to off for JalviewJS
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2019-02-07
gmungoc
JAL-3140 updated to latest intervalstore.jar
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2019-02-05
hansonr
latest transpiler and runtime
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2019-02-05
gmungoc
JAL-3032 check enough sequences selected on construction
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2019-02-05
gmungoc
Test (passes!) for dialog message truncation
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2019-02-05
gmungoc
JAL-3048 JS-compatible confirm dialog on delete all
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2019-02-04
hansonr
JSON parsing from a StringInputStream
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2019-02-04
hansonr
SequenceFetcher JvCacheableInputBox isJS test
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2019-02-04
hansonr
*new transpiler* and runtime.
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2019-02-04
hansonr
refactoring for DBMODList
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2019-02-04
hansonr
MIG -- explicitly sets Java9 switch to true for SwingJS
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2019-02-04
hansonr
explicitly sets MIG platform defaults to WINDOWS_XP
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2019-02-04
hansonr
adds protype size to JTextArea hack for nonexistent...
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2019-02-04
hansonr
fixing array processing order
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2019-02-04
hansonr
re-transpiled MIGLayout; JS-adapted AnnotationColumnChooser
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2019-02-04
hansonr
Test suite try/catch reverted
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2019-02-04
hansonr
unused - could be trashed.
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2019-02-04
hansonr
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
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2019-02-04
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into Jalview...
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2019-02-04
gmungoc
JAL-3143 update unit test for ID -> id change
feature/JAL-3143ensemblJSON
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2019-02-01
hansonr
fix for org.json.JSONObject writing (both in Java and...
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2019-02-01
hansonr
removes unnecessary org.xml.sax; these are in SwingJS
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2019-02-01
Ben Soares
JAL-3141 Slight efficiency gain in detecting backupfile...
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2019-01-31
hansonr
Split pane removing title bar for JInternalFrames
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2019-01-31
hansonr
fixes org.json.JSONObject for fully qualified method...
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2019-01-31
hansonr
removes org.json from srcjar
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2019-01-30
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of
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2019-01-30
gmungoc
JAL-3144 don't change comma to semi-colon if not requested!
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2019-01-30
hansonr
woops.
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2019-01-30
hansonr
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
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2019-01-30
hansonr
Fix for textarea not updating value ("value", not ...
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2019-01-30
hansonr
fixes unidentified Java problem
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2019-01-30
gmungoc
JAL-3056 no export as BioJS in JalviewJS
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2019-01-30
Ben Soares
JAL-3141 Enabled the 'Include backpup files' checkbox...
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2019-01-29
hansonr
classpath to include test always
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2019-01-29
hansonr
JSON writing fix, JColorChooser (mnemonic change) fix
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2019-01-29
hansonr
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
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2019-01-29
hansonr
test package fix for List<DBRefEntry> DBrefs (untested)
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2019-01-29
Ben Soares
JAL-3141 Found a good fix for updating the FileChooser...
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2019-01-29
Ben Soares
JAL-3141 Found a (not ideal) fix for updating the FileC...
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2019-01-29
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of...
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2019-01-29
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into trialMerge
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2019-01-29
gmungoc
JAL-3143 format alleles array for feature description
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2019-01-29
hansonr
Fetch Sequences...PDB - all tabs working
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2019-01-29
hansonr
experiment using a register buffer instead of creating...
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2019-01-29
hansonr
timing notes; SwingJS for StringBuilder/Buffer
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2019-01-29
hansonr
iterators
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2019-01-29
hansonr
time check, iterators
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2019-01-29
hansonr
JSON moved to swingjs/json
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2019-01-29
hansonr
JSON code moved to swingjs.json.JSON
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2019-01-29
hansonr
more iterators out; some time checks
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2019-01-28
gmungoc
JAL-3032 revert change to tooltip StringBuilder length
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2019-01-28
Ben Soares
JAL-3141 improvement on BackupFilenameParts filename...
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2019-01-28
Ben Soares
JAL-3141 fixed test
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2019-01-26
hansonr
final timing checks for optimization
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2019-01-26
hansonr
Platform.timecheck calls removed or commented out.
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2019-01-26
hansonr
removing cyclic call
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2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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2019-01-26
hansonr
timestamp just before major refactoring in relation...
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2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
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2019-01-25
hansonr
SwingJS update (maybe nothing?)
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2019-01-25
hansonr
timing code
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2019-01-25
hansonr
JSON refactoring
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2019-01-25
hansonr
JavaScript browser-based JSON parsing
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2019-01-25
hansonr
Timing code
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