jalview.git
2006-10-12 amwaterhouseshowQuality may be updated during archive file load
2006-10-12 amwaterhouseConvenient function findEndRes
2006-10-12 amwaterhouseAdd features from Popupmenu
2006-10-12 amwaterhouseOverview may request index beyond alignment height
2006-10-12 amwaterhouseUse i, not index if not representedSeqs
2006-10-12 amwaterhouseIf conservation is null, disable Blosum62 and conservat...
2006-10-12 amwaterhouseAnnotasiont[j] might be null
2006-10-12 amwaterhouseLocal adjustForhiddenSeqs routine
2006-10-12 amwaterhouseRepresentGroup count items
2006-10-12 amwaterhouseNull element checked
2006-10-12 amwaterhouseHiddenSequences now array, not hashtable
2006-10-12 amwaterhouseComment out debug to compile applet
2006-10-11 jprocterfixes exception (array index out of bounds - due to...
2006-10-10 jprocterrefined id matching to pick the closest match (by lengt...
2006-10-10 jprocterdebug message bugfix on duplicate tree leaf names.
2006-10-10 amwaterhouseNo need to find index when deleting
2006-10-10 amwaterhouseCalculate alWidth earlier
2006-10-10 amwaterhouseRemove growing hashtable
2006-10-10 amwaterhouseCheck on null consensus
2006-10-10 jprocterbugfix for dodgy trees which contain the same leafname...
2006-10-10 amwaterhouseMust repaint whole alignPanel
2006-10-10 amwaterhouseMaxResidue must be at least 2
2006-10-10 amwaterhouseRemove unneccessary separator
2006-10-10 amwaterhouseOnly getGroups once if groupEditingcvs update
2006-10-10 amwaterhouse1.1 compatible
2006-10-10 amwaterhouseUse AAFrequency final keys
2006-10-10 amwaterhouseSetTooltip empty
2006-10-10 amwaterhouseOptimized
2006-10-10 amwaterhouseaaIndex replaces aaHash
2006-10-10 amwaterhousestatic final strings for consensus keys
2006-10-10 amwaterhouseConsensus and conservation updated in threads
2006-10-09 jprocterfixed log4j complaints for vamsas logging (again)
2006-10-09 jprocterfixed log4j complaints for vamsas logging.
2006-10-09 jprocterexcluded log4j properties.
2006-10-09 jprocterjava 1.4 compliant classes.
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code...
2006-10-09 jprocterset firstColumn property for an alignmentView object.
2006-10-09 jprocterfixed getCompactAlignment method to return proper cigar...
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely...
2006-10-06 jprocterjavadoc
2006-10-06 jprocternew getVisibleContigs method mirrors the getVisibleCont...
2006-10-06 amwaterhouseAAFrequency optimized
2006-10-06 amwaterhouseSet consensus as hashtble[]
2006-10-05 amwaterhouseMultiple Views
2006-10-05 amwaterhouseBatchSize now 10
2006-10-05 amwaterhouseOutOfMemoryError test
2006-10-05 amwaterhouseTabbedPanes for views
2006-10-05 amwaterhouselower case available
2006-10-05 amwaterhouseAlignFrame must take width and height
2006-10-05 amwaterhouseSequenceset may be empty, multiple views
2006-10-05 amwaterhouseDEFAULT_WIDTH
2006-10-05 amwaterhouseViewname, sequencesetid, gatheredViews
2006-10-05 amwaterhouseSequences are optionalcvs diff vamsas.xsd
2006-10-03 amwaterhouseCheck annotation is editable
2006-10-03 amwaterhouseSend DAS requests in batches of 20
2006-10-03 amwaterhouseDB seqs may be lower or upper case
2006-10-03 amwaterhouseBoldFont upperCase
2006-10-03 amwaterhouseRemove empty() from feature ToolTip
2006-10-03 amwaterhouseCheck selection scroll beyond aligmnment height
2006-10-03 amwaterhouseCheck on vscrollMax values
2006-10-03 amwaterhouseupperCaseBold
2006-10-03 amwaterhouseTurnColour bug on popupmenu applet
2006-09-27 jprocterfixed tree building exception when one residue or a...
2006-09-18 amwaterhouseDraw hidden column marker correctly
2006-09-18 amwaterhouseclick node to select sequences
2006-09-15 amwaterhouseSimplified schema
2006-09-15 amwaterhouseSimplified layout
2006-09-12 amwaterhousehideSequence hide all before recalc consensus
2006-09-12 amwaterhouseCopy consensus
2006-09-12 amwaterhouse2.1.1 bug fix
2006-09-12 amwaterhouse2.1.1 bug fix
2006-09-12 amwaterhouseAdd copy consensus sequence
2006-09-12 amwaterhouseAllow alt for group editing
2006-09-12 amwaterhouseFor now ignore middle mouse font resize on Mac applet
2006-09-12 amwaterhouseAllow alt button for Mac applet group editing
2006-09-11 amwaterhouseComment out lower case colouring for bug fix release
2006-09-11 amwaterhouseRemove system.outs
2006-09-11 amwaterhouseget idWidth should use italic font when getting size
2006-09-11 amwaterhouseError message if file not found moved for headless...
2006-09-11 amwaterhousevisWidth allows borders to be drawn around offscreen...
2006-09-11 amwaterhouseRemove system.out
2006-09-11 amwaterhousegetVisibleIdWidth() for making images
2006-09-07 jprocteradded copy consensus sequence to consensus annotation...
2006-09-05 jproctergetVisibleContigs() returns start and end positions...
2006-09-05 jprocterjavadoc on contigs
2006-09-01 amwaterhouseDont look for middle mouse on the Mac
2006-09-01 amwaterhouseMAC moved to viewport
2006-09-01 amwaterhousefeature settings
2006-09-01 amwaterhouseFeature Settings
2006-08-30 amwaterhouseGraphHeight might be zero
2006-08-30 amwaterhousejnet file is 1 to 1 mapping
2006-08-30 amwaterhouseRemove unnecessary separotor
2006-08-30 amwaterhouseGap added to aa3Hash
2006-08-30 amwaterhouseUser colours are case sensitive
2006-08-29 amwaterhouseCan shrink graph to zero
2006-08-29 amwaterhouseNo stacktrace
2006-08-29 amwaterhousecreateMapping alreadyMapped
2006-08-29 amwaterhouseAdditional repaint
2006-08-29 amwaterhousejnetfile can be loaded onto alignment
2006-08-29 amwaterhouseSequenceMapping updated
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