jalview.git
2007-03-19 jproctertranslate aligned cDNA to aligned peptide
2007-03-19 jprocterretrieve and parse EMBL records to view exons.
2007-03-19 jprocterconvenience method to get visible selected region.
2007-03-19 jprocternull exception when annotation created with no description.
2007-03-19 jprocterNew method for mapping from common database sources...
2007-03-19 jprocternote about selenocystine.
2007-03-19 jprocterdisambiguate jalview.datamodel.Mapping from castor...
2007-03-19 jprocterinitial support for EMBL file parsing.
2007-03-19 jprocterequals operation used for canonicalisation of DBRefList...
2007-03-19 jproctermapping implemented by MapList added to DBRefEntry.
2007-03-19 jprocterjavadoc typo
2007-03-19 jproctercopy constructor
2007-02-27 amwaterhouseUncomment graphics 2d bit
2007-02-27 amwaterhouseLaunch applet jmol
2007-02-27 amwaterhouseUse paintAlignment
2007-02-27 amwaterhousecheck conservation length
2007-02-27 amwaterhouseStructure listener
2007-02-27 amwaterhouseremove p+3 < query.length
2007-02-27 amwaterhouseNo longer use ref to seqcanvas for painting
2007-02-27 amwaterhouseblank space for chain name if empty
2007-02-27 amwaterhousekeep record of atomIndeX
2007-02-27 amwaterhousejmol added
2007-02-27 amwaterhousejmol
2007-02-12 amwaterhouseversion 3.7
2007-02-12 amwaterhousedate added
2007-02-12 amwaterhouse>0 rather than -1 check
2007-02-12 jproctertranfer pdbresno features to dataset sequence.
2007-02-12 amwaterhouseReload jar files
2007-02-12 amwaterhouseHashtable for previously loaded pdb files
2007-02-12 amwaterhouseMake checkbox bigger for text on mac
2007-02-09 jprocterrunning jalview from the command line.
2007-02-09 jprocteradded command line help documentation and preferences...
2007-02-09 jprocteradded 'show overview' preference.
2007-02-08 jprocterfix on newquestionaire notification bug (again)
2007-02-07 amwaterhouseformatted
2007-02-07 amwaterhouserestore unformatted state
2007-02-07 amwaterhouseFormatting
2007-02-07 amwaterhouseformatting
2007-02-07 amwaterhouseExtend annotation if too short
2007-02-07 amwaterhousereload, just close this frame and open a new one
2007-02-07 amwaterhouse2.2.1 changes
2007-02-07 amwaterhouseremoved
2007-02-06 jprocterhardwired default user questionnaire url and by default...
2007-02-06 jproctermore bugfixes.
2007-02-06 amwaterhouse2.2.1 updates
2007-02-06 amwaterhouseDont add null description to tooltip
2007-02-06 amwaterhouseApplet params cant read tab character
2007-02-06 amwaterhouseAllow for frame insets
2007-02-06 amwaterhouseFormat label
2007-02-06 jprocterdebug log message
2007-02-05 jproctersimplified and refactored along with cgi-script.
2007-02-05 amwaterhouseAlignment editing columns 0 and 1 fixed
2007-02-05 jproctercommand line hook for questionnaire url argument.
2007-02-05 jprocterkkv change
2007-02-05 jprocterclient side machinery for user questionnaire responses
2007-02-05 amwaterhouseFixed bug in trim right annotation adjust
2007-02-05 amwaterhousestop flickering annotationPanel
2007-02-05 amwaterhouseFixed bug in trim right annotation adjust
2007-02-05 amwaterhouseimage is panel size
2007-02-05 amwaterhouseapplet can define groups as parameters
2007-02-02 amwaterhouseDont add group if seqs not found
2007-02-02 amwaterhousegetWidth -1 for trim right
2007-02-02 amwaterhousecheck annotation size when cutting
2007-02-02 amwaterhouseannotation might have been deleted
2007-02-02 amwaterhousecatch control down before editing null pointer
2007-02-02 amwaterhouse22 = scrollbar and insets widthcvs diff gui/AlignmentPa...
2007-02-02 amwaterhouseMust allow for scollbar and frame insets when getting...
2007-02-02 amwaterhouseLookandFeel must be set in headless state as window...
2007-02-01 amwaterhouseremoved deprecated bits
2007-02-01 amwaterhousefind colours uncommented
2007-02-01 amwaterhousesequence.getStart() in findTrueIndex
2007-02-01 amwaterhouseget fontmetrics from pg
2007-02-01 amwaterhouseDont add null tooltip
2007-02-01 amwaterhouseNew description
2007-02-01 amwaterhousetooltips
2007-02-01 amwaterhouseset description for groups
2007-02-01 amwaterhouseDoesnt move with mouse, friendlier for mac users
2007-02-01 amwaterhouseDont repaint tooltip
2007-02-01 amwaterhouseOne class for edit name/description
2007-01-31 amwaterhouseslightly larger window edit name/desc
2007-01-31 amwaterhouseedit annotation name/description
2007-01-31 amwaterhouseCan edit annotation name/description
2007-01-31 amwaterhouseConsensus, conservation, quality labels may have changed
2007-01-31 amwaterhousealigned not used
2007-01-31 amwaterhouseDont export annotations if not visible
2007-01-31 amwaterhouseUnique name for new group and treegroup
2007-01-31 amwaterhouseAdjust features when cutting and pasting
2007-01-31 amwaterhousemake new dataset seq if residues deleted
2007-01-31 amwaterhousecopy feature: check for null values
2007-01-31 amwaterhousealigned not used
2007-01-30 amwaterhouseCheck valid residues in ss
2007-01-30 amwaterhouseCheck seqs in group exist in this alignment
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space
2007-01-30 amwaterhousemoved painting routine
2007-01-30 amwaterhouseconsensusColouring never used
2007-01-30 amwaterhouseDraw helices correctly
2007-01-30 amwaterhouseUse util toHexString
2007-01-30 amwaterhouseOutput groups in annotation file
2007-01-29 amwaterhouseDont clear graphics g before drawing the image
2007-01-29 amwaterhouseImage for labels, stops flickering
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