jalview.git
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and...
2013-11-25 Jim Procteradivce from ant.apache.org/manual/Tasks/signjar.html re
2013-11-25 Jim ProcterJAL-1139 need to explicitly specify SHA1 for java 6...
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
2013-11-25 Jim ProcterJAL-1139 supress dependency warnings from proguard
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
2013-11-25 Jim ProcterJAL-1139 latest version of proguard needed for Java...
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch
2013-11-07 Jim ProcterJAL-1286 additional tests to ensure that non-GZ files...
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens...
2013-11-07 Jim ProcterJAL-1286 test input of gzip stream from local file
2013-11-05 Jim ProcterJAL-1400 found a fix for the sandbox exception - need...
2013-11-05 Jim Procterexperiment with reinstating the sandbox permissions
2013-11-05 Jim ProcterJAL-1400 try putting explicit domain for jalviewLite...
2013-11-05 Jim ProcterJAL-1400 Always create indices for jar before signing
2013-11-05 Jim ProcterJAL-1400 sign everything !
2013-11-05 Jim ProcterJAL-1400 explicit security settings for applet
2013-11-05 Jim ProcterJAL-1400 explicit security permissions for Desktop
2013-11-01 Jalview build... JAL-1403 make sure MacOS installer searchers for the...
2013-11-01 Jalview build... JAL-1403 make sure MacOS installer searchers for the...
2013-10-23 Jalview build... Merge branch 'JAL-1403' into Release_2_8_1_Branch
2013-10-23 Jalview build... JAL-1403 updated paths to IA 2013 and additional build...
2013-10-23 Jalview build... JAL-1403 upgraded the InstallAnywhere build file to...
2013-10-17 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch
2013-10-17 Jim Procterfix for JAL-1398 - original colourscheme is enabled...
2013-10-17 Jim ProcterJAL-1233 TODO concerning the way we propagate annotatio...
2013-10-17 Jim ProcterJAL-1397 make sure annotation colourscheme is up to...
2013-10-17 Jim ProcterJAL-1397 store colour by sequence and originalColour...
2013-10-17 Jim ProcterJAL-1397 make sure ColourschemeI instances are up to...
2013-10-17 Jim ProcterJAL-1397 propagate any consensus/conservation coloursch...
2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag
2013-10-16 Jim ProcterMerge branch 'JAL-1395' into Release_2_8_1_Branch
2013-10-16 Jim ProcterJAL-1395 do not calculate non-gap consensus when no...
2013-10-11 Jim ProcterMerge branch 'JAL-1292_regression' into Release_2_8_1_B...
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea...
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea...
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start...
2013-10-11 Jim ProcterJAL-1114 javadoc
2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable field...
2013-10-11 Jim ProcterJAL-1114 API javadoc
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences...
2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface
2013-10-11 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2...
2013-10-11 Jim ProcterJAL-1354 watch for exceptions when initialising (Securi...
2013-10-11 Jim ProcterJAL-1354 ensure resource bundles are copied into Jalvie...
2013-10-08 Jim Procterreindexed Jmol jar with 'jar -i' to fix JAL-1389
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2...
2013-10-08 Jim Procterlocalisation for JAL-1384 and JAL-1388
2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
2013-10-08 Jim ProcterMerge branch 'JAL-643_JAL-1384' into Release_2_8_1_Branch
2013-10-08 Jim ProcterJAL-1384 JAL-1388 revised popup menu documentation...
2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu
2013-10-08 Jim Procterfix for JAL-1387
2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for...
2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl...
2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2013-10-07 Jim ProcterJAL-1385 expose core view model methods in interface
2013-10-07 Jim ProcterJAL-1385 Alignment view controller logic implementation...
2013-10-05 Jim ProcterMerge branch 'JAL-1378_jb2.1cli' into Release_2_8_1_Branch
2013-10-05 Jim ProcterJAL-1379 graceful degradation to legacy service when...
2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore...
2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary...
2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto...
2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries...
2013-10-04 Jim ProcterJAL-1383 - disable startup of the Envision2 workflow...
2013-10-04 Jim ProcterJAL-940 JAL-1378 EOL comment on JWS v1 services
2013-10-04 Jim Procterupdate JABA client dependency in InstallAnywhere build
2013-10-04 Jim ProcterMerge branch 'RNAalifold' into Release_2_8_1_Branch
2013-10-04 Jim Procterfix for JAL-1380 and efficiency todo for JAL-1381
2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA...
2013-09-25 Jim ProcterJAL-1365 test that RNAAliFold service settings are...
2013-09-25 Jim Procterformatting
2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold...
2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metad...
2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and...
2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous...
2013-09-25 Jim ProcterJAL-1270 nominal jalview version string for projects...
2013-09-25 Jim ProcterJAL-1270 Desktop.instance is null during headless jalvi...
2013-09-20 Jim Procterformatting
2013-09-18 Jim ProcterJAL-1355 - fix compilation errors: typos and missing...
2013-09-13 Jim Proctertweak - v is lowercase in Jalview
2013-09-13 darolmari18n how to
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold
2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch
2013-09-03 Jim ProcterJAL-1373 tweak precision calculation so alignments...
2013-09-03 Jim ProcterJAL-920 compute a consensus for single sequence
2013-09-02 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch
2013-09-02 Jim ProcterJAL-1373 JAL-520 wrap tooltips for columns in annotatio...
2013-09-02 Jim ProcterJAL-1373 generate percentages with appropriate precision
2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus renderi...
2013-09-02 Jim ProcterJAL-1358 monday morning commits :(
2013-09-02 Jim ProcterJAL-1358 jabaws not jaba
2013-09-02 Jim ProcterJAL-1358 update jabaws client for installanywhere
2013-09-02 Jim ProcterJAL-1358 remove old v2 jaba min-client
2013-08-31 Daniel BartonBrief html documentation entry for RNAalifold under...
2013-08-30 Daniel BartonColour be RNA helices bug fixed
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