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jalview.git
2019-10-09 Mateusz WarownyJAL-3066 Read parameters directly from args list allowi... commit | commitdiff | tree | snapshot
2019-10-09 Mateusz WarownyUpdate slivka-client library: multiple form field values. commit | commitdiff | tree | snapshot
2019-10-09 Mateusz WarownyJAL-3066 Fix log files retrieval. commit | commitdiff | tree | snapshot
2019-10-07 Mateusz WarownyJal-3066 Retrieve job log and error log from the server. commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterRevert "JAL-3070 JAL-3066 fix initialisation of slivka... commit | commitdiff | tree | snapshot
2019-10-07 Mateusz WarownyJAL-3066 AACon: pass the instance name of the service... commit | commitdiff | tree | snapshot
2019-10-07 Mateusz WarownyJAL-3066 Check if annotation and features are present... commit | commitdiff | tree | snapshot
2019-10-07 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3066 report job ID when submitted commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3066 debug info: check response when adding feature... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3066 JAL-3070 AACon: pass the name of the service... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3066 hack to instantiate the correct client accordi... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3070 jaba/slivka independent tests for disorder... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3070 JAL-3066 provide standard concrete instances... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3070 JAL-3066 fix initialisation of slivka ServiceW... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3070 use identity equivalence for workers rather... commit | commitdiff | tree | snapshot
2019-10-07 Jim ProcterJAL-3070 formatting commit | commitdiff | tree | snapshot
2019-10-04 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi... commit | commitdiff | tree | snapshot
2019-10-03 Jim ProcterJAL-3070 reinstate the internal test service URL for... commit | commitdiff | tree | snapshot
2019-10-03 Jim ProcterJAL-3070 test jabaws and slivka AACon service functionality commit | commitdiff | tree | snapshot
2019-10-03 Jim ProcterJAL-3070 slivka service discovery as a background threa... commit | commitdiff | tree | snapshot
2019-10-03 Jim ProcterJAL-3070 basic AACon service functionality test commit | commitdiff | tree | snapshot
2019-10-03 Jim ProcterJAL-3070 alignment analysis service worker UI and setti... commit | commitdiff | tree | snapshot
2019-10-03 Jim ProcterJAL-3070 call checkDone() ASAP to avoid race condition... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 decouple WsMenuEntryProviderI code from JABAWS commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 reorganise prior to refactor commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 make AlignCalcUI service code work only with... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 discoverers return ServiceWithParameter, now... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 decontaminate the ‘preferred service’ methods... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 JAL-3062 tidy up slivka ws menu builder and... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 detect failed/broken annotation web service... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 pull up generic methods for an automatic align... commit | commitdiff | tree | snapshot
2019-10-02 Jim ProcterJAL-3070 TODO commit | commitdiff | tree | snapshot
2019-10-01 Mateusz WarownyJAL-3066 Sequence annotation services. commit | commitdiff | tree | snapshot
2019-09-27 Mateusz WarownyJAL-3066 Automatically discoverable Protein sequence... commit | commitdiff | tree | snapshot
2019-09-27 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi... commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 oops - refactor Slivka’s service stub too :) commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-3067 refactor annotation web... commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-2808 allow feature filter definit... commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 allow SequenceI.findPositions(0,column+1)... commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 cope when dataset sequence is passed commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 JAL-3066 formatting commit | commitdiff | tree | snapshot
2019-09-26 Jim ProcterJAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(Alignm... commit | commitdiff | tree | snapshot
2019-09-24 Jim ProcterJAL-3070 tidying commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3066 JAL-3070 pull up non-jabaws specific service... commit | commitdiff | tree | snapshot
2019-09-23 Mateusz WarownyJAL-3066 Annotation Service Instance stub commit | commitdiff | tree | snapshot
2019-09-23 Mateusz WarownySlivkaWSDiscoverer formatting fix commit | commitdiff | tree | snapshot
2019-09-23 Mateusz WarownyJAL-3066 Move common web service methods to abstract... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 configure annotation service manager from... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 ensure RNAAliFold annotation rows display... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 formatting commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 detect presence of existing JABA RNAAliFold... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 match AbstractJabaCalcWorker’s annotation... commit | commitdiff | tree | snapshot
2019-09-23 Jim ProcterJAL-3070 javadoc for (mostly) jabaws specific methods commit | commitdiff | tree | snapshot
2019-09-20 Jim ProcterJAL-3070 rough-and-ready refactor of JABA SequenceAnnot... commit | commitdiff | tree | snapshot
2019-09-20 Jim ProcterJAL-3070 JAL-1379 deferred work on annotation based... commit | commitdiff | tree | snapshot
2019-09-20 Jim ProcterJAL-3070 JAL-2507 fix up test output and honour the... commit | commitdiff | tree | snapshot
2019-09-19 Mateusz WarownyJAL-3066 Auto discover multiple sequence alignment... commit | commitdiff | tree | snapshot
2019-09-17 Jim ProcterJAL-3432 hide the slider when validator has no min... commit | commitdiff | tree | snapshot
2019-09-16 Mateusz WarownySet the initial value of the choice field to the defaul... commit | commitdiff | tree | snapshot
2019-09-16 Mateusz WarownyAdd the remaining msa services to the Discoverer commit | commitdiff | tree | snapshot
2019-09-11 Mateusz WarownyChange choice field to use dropbox instead of radio... commit | commitdiff | tree | snapshot
2019-09-11 Mateusz WarownyCreate generic msa service instance commit | commitdiff | tree | snapshot
2019-09-06 Mateusz WarownyMerge remote-tracking branch 'origin/alpha/JAL-3066_Jal... commit | commitdiff | tree | snapshot
2019-09-06 Mateusz WarownyJAL-3066 Working custom parameters for clustalo commit | commitdiff | tree | snapshot
2019-09-06 Jim ProcterJAL-3066 fix compile error (@matesuz - this will confli... commit | commitdiff | tree | snapshot
2019-09-06 Jim ProcterJAL_1426 JAL-3066 update Apache James mime parser and... commit | commitdiff | tree | snapshot
2019-09-06 Mateusz WarownyJAL-1426 Replacing old apache-http jars. commit | commitdiff | tree | snapshot
2019-09-05 Mateusz WarownyJAL-3066 Implement clustaloWS using slivka system. commit | commitdiff | tree | snapshot
2019-08-13 Jim ProcterJAL-3362 keep Java 1.8 build happy by specifying generi... commit | commitdiff | tree | snapshot
2019-08-13 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into... commit | commitdiff | tree | snapshot
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... commit | commitdiff | tree | snapshot
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... commit | commitdiff | tree | snapshot
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'... commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId() commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... commit | commitdiff | tree | snapshot
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-1793 only decode specific special characters in... commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields commit | commitdiff | tree | snapshot
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data commit | commitdiff | tree | snapshot
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting... commit | commitdiff | tree | snapshot
2019-07-15 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 can now choose number of jackhmmer iterations merge/JAL-3285_mchmmer_with_211_develop commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 fix faulty label in a MessageManager.getString... commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 add sort by evalue and bit score commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 hmmer searches now read domain rather than... commit | commitdiff | tree | snapshot
2019-07-11 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... commit | commitdiff | tree | snapshot
2019-07-11 ThomasJAL-2629 hmmer searches include seqs past inclusion... commit | commitdiff | tree | snapshot
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