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2018-08-06 Jim ProcterJAL-3070 additional interfaces for web services (not... commit | commitdiff | tree | snapshot
2018-08-06 Jim ProcterJAL-3070 updated .classpath for slivka-enabled Jalview commit | commitdiff | tree | snapshot
2018-08-06 Jim ProcterJAL-3070 TODO for mateusz commit | commitdiff | tree | snapshot
2018-08-06 Jim ProcterJAL-3070 md doc for implementors of new web services... commit | commitdiff | tree | snapshot
2018-08-03 Jim ProcterJAL-3070 MsaWSClient doens’t depend on Jws2Instance... commit | commitdiff | tree | snapshot
2018-08-03 Jim ProcterJAL-3070 web service handle with UIinfo.hasParameters... commit | commitdiff | tree | snapshot
2018-08-02 Jim ProcterJAL-3070 base interface for service endpoint implementa... commit | commitdiff | tree | snapshot
2018-08-02 Jim ProcterMerge branch 'testpaches/JAL-2719_JAL-1264_testfails... commit | commitdiff | tree | snapshot
2018-08-02 Jim ProcterJAL-2719 JAL-1264 add annotation elements so “Add Refer... testpaches/JAL-2719_JAL-1264_testfails commit | commitdiff | tree | snapshot
2018-08-02 Jim ProcterJAL-2994 put ‘\’ first in character class clause of... commit | commitdiff | tree | snapshot
2018-08-02 Jim ProcterJAL-3070 clearer test failed error message for REST... commit | commitdiff | tree | snapshot
2018-08-02 Jim ProcterJAL-3070 set host URL correctly from parsed description... commit | commitdiff | tree | snapshot
2018-08-01 Jim ProcterJAL-3070 refactored Client specific code from jalview... commit | commitdiff | tree | snapshot
2018-07-27 Jim ProcterJAL-3070 pull up sequence anonymisation hash, presets... commit | commitdiff | tree | snapshot
2018-07-26 Jim ProcterJAL-3070 pull up logic for offering a parameters dialog... commit | commitdiff | tree | snapshot
2018-07-26 Jim ProcterJAL-3070 abstract class for services with adjustable... commit | commitdiff | tree | snapshot
2018-07-26 Jim ProcterJAL-3070 use ArgumentI in all public constructors,... commit | commitdiff | tree | snapshot
2018-07-26 Jim ProcterJAL-3070 pull up setWebService and alignFrame reference commit | commitdiff | tree | snapshot
2018-07-26 Jim ProcterJAL-3070 UIinfo provides JobParameterStoreI commit | commitdiff | tree | snapshot
2018-07-23 Jim ProcterJAL-3070 pushed down JABAWS specific args for WsJobPara... commit | commitdiff | tree | snapshot
2018-07-23 Jim ProcterJAL-3070 refactored JABAWS specific jalview.gui.WsJobPa... commit | commitdiff | tree | snapshot
2018-07-23 Jim Procter final merge for merge/wsinterfaces_mchmmer_JAL-3070_JA... commit | commitdiff | tree | snapshot
2018-07-23 Jim ProcterMerge branch 'features/mchmmer' into merge/wsinterfaces... commit | commitdiff | tree | snapshot
2018-07-20 Jim ProcterJAL-3070 pull up hostURL and postURL to UIinfo and... commit | commitdiff | tree | snapshot
2018-07-20 Jim ProcterJAL-3070 core service descriptors for JABAWS services... commit | commitdiff | tree | snapshot
2018-07-20 Jim ProcterJAL-3070 refactored base analysis action descriptor... commit | commitdiff | tree | snapshot
2018-07-12 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2018-07-02 Jim ProcterMerge branch 'task/JAL-3047_clovercoverage' into develop commit | commitdiff | tree | snapshot
2018-07-02 Jim ProcterJAL-3047 don’t let the makedist task complete if a... commit | commitdiff | tree | snapshot
2018-07-02 Jim ProcterJAL-3047 ‘cloverclasses’ build directory for instrument... commit | commitdiff | tree | snapshot
2018-06-27 Jim ProcterJAL-3047 enable clover for testng commit | commitdiff | tree | snapshot
2018-06-27 Jim ProcterJAL-3047 ignore clover output dir commit | commitdiff | tree | snapshot
2018-06-27 Jim ProcterJAL-3047 ant -Dclover.jar=../path/to/clover/lib/clover... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterMerge branch 'task/JAL-3042_remove_SimpleDocument_depen... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3042 remove mention of adjustable search box histor... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3042 don't allow user to change default history... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3035 removed jdas in libs documentation and noted... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3035 documentation in 2.11 release notes (and 2... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3035 remove DAS UI documentation commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! commit | commitdiff | tree | snapshot
2018-06-26 Jim ProcterJAL-3035 (unrelated) random XML error in nbbuild.xml commit | commitdiff | tree | snapshot
2018-06-07 gmungocJAL-2755 correct Javadoc and error handling commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-3013 resolve symlink to hmmer binaries folder features/mchmmer commit | commitdiff | tree | snapshot
2018-06-06 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved commit | commitdiff | tree | snapshot
2018-06-06 gmungocJAL-2956 don't load (non-existent) HMMER jar entry... commit | commitdiff | tree | snapshot
2018-06-05 gmungocJAL-3011 include annotation scores in sequence id toolt... commit | commitdiff | tree | snapshot
2018-06-05 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed... commit | commitdiff | tree | snapshot
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList commit | commitdiff | tree | snapshot
2018-06-04 gmungocJAL-3018 updated REST versions to 6.3 commit | commitdiff | tree | snapshot
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed... commit | commitdiff | tree | snapshot
2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-2629 suppress 'Add Database' menu option in favour... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3005 JAL-2629 file chooser argument for HMM search... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3005 JAL-3008 render file chooser and radio button... commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3008 new parameter type RadioChoiceParameter commit | commitdiff | tree | snapshot
2018-05-30 gmungocJAL-3005 new argument type FileParameter for file chooser commit | commitdiff | tree | snapshot
2018-05-29 gmungocJAL-3005 refactor updateRecentlyOpened to enable reuse commit | commitdiff | tree | snapshot
2018-05-29 Mungo CarstairsJAL-2994 utility method to match a list of folder/file... commit | commitdiff | tree | snapshot
2018-05-28 gmungocJAL-2994 restrict search to \Program Files\Chimera* commit | commitdiff | tree | snapshot
2018-05-28 gmungocJAL-2994 use pattern matches to search for chimera.exe commit | commitdiff | tree | snapshot
2018-05-28 gmungocMerge branch 'develop' into features/mchmmer commit | commitdiff | tree | snapshot
2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop commit | commitdiff | tree | snapshot
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... commit | commitdiff | tree | snapshot
2018-05-26 Jim ProcterJAL-2999 release date for 2.10.4b1 set for 27th May... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'documentation/JAL-2999_r2104b1' into... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea... commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterMerge branch 'feature/JAL-2994chimeraPath' into release... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 clarify release notes - and mention that short... commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-2994 add a few future release points for good measu... feature/JAL-2994chimeraPath commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows commit | commitdiff | tree | snapshot
2018-05-25 Jim ProcterJAL-1460 javadoc commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse... commit | commitdiff | tree | snapshot
2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-2999 issues resolved (or nearly so) for 2.10.4b1 commit | commitdiff | tree | snapshot
2018-05-24 gmungocJAL-2997 additional tests commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when... commit | commitdiff | tree | snapshot
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces... commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2997 unit test commit | commitdiff | tree | snapshot
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview commit | commitdiff | tree | snapshot
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2999 release notes and version bump for jalview... commit | commitdiff | tree | snapshot
2018-05-23 Jim ProcterJAL-2895 replace $$Jalview-Version$$ in help.jhm with... commit | commitdiff | tree | snapshot
2018-05-22 gmungocJAL-2716 fix to reset choice parameter on Revert commit | commitdiff | tree | snapshot
2018-05-22 gmungocJAL-2716 fix broken checkIfModified behaviour commit | commitdiff | tree | snapshot
2018-05-22 gmungocJAL-2629 method refactor and menu tidying commit | commitdiff | tree | snapshot
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797 commit | commitdiff | tree | snapshot
2018-05-15 gmungocJAL-2719 parse bit score annotation from search results commit | commitdiff | tree | snapshot
2018-05-15 gmungocJAL-1264 exclude score-only from 'Add Reference Annotat... commit | commitdiff | tree | snapshot
2018-05-15 gmungocJAL-2629 JAL-2937 respect 'align automatically' option... commit | commitdiff | tree | snapshot
2018-05-14 gmungocJAL-2989 refactoring to reduce code duplication commit | commitdiff | tree | snapshot
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