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jalview.git
2019-04-17
Jim Procter
JAL-3111 tweak PCA documentation
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2019-04-17
Jim Procter
Merge branch 'develop' into documentation/JAL-3111_rele...
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2019-04-17
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-04-17
Ben Soares
JAL-3224 Add commons-compress-1.18.jar
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2019-04-17
Ben Soares
JAL-3224 Bundling appropriate Mac OS/Windows JRE as...
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2019-04-17
Ben Soares
JAL-3224 New version of getdown which will cope with...
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2019-04-16
Ben Soares
JAL-3130 moved resources/install4j to utils/install4j
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2019-04-16
hansonr
better resource loading/file caching
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2019-04-16
hansonr
caching of DnD files dropped
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2019-04-16
hansonr
jmol-app updated for SwingJS ZipTools upgrade
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2019-04-16
hansonr
localizes Thread colourby so that it does not cause...
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2019-04-16
hansonr
comments only
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2019-04-16
Jim Procter
JAL-3130 tidy up system.output
jims/JAL-3130_Java11_Gradle_publishing
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2019-04-16
Jim Procter
JAL-3130 call Jalview via the Test JVM’s JAVA_HOME...
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2019-04-16
Jim Procter
JAL-3130 refactored ‘clover’ to ‘use_clover’ since...
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2019-04-16
Jim Procter
JAL-3130 JAL-1889 reportCurrentWorkingDirectory test...
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2019-04-16
hansonr
missing check for JavaScript in client response for...
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2019-04-16
Jim Procter
JAL-3130 JAL-1889 report absolute paths for CommandLine...
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2019-04-16
hansonr
unused old SwingJS dependencies
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2019-04-16
hansonr
unused old SwingJS dependencies
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2019-04-16
Jim Procter
JAL-3130 JAL-1889 report absolute paths for CommandLine...
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2019-04-16
Jim Procter
JAL-3130 JAL-1889 report absolute paths for CommandLine...
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2019-04-16
hansonr
Adds _j2sclasslist.txt to SwingJS distribution; fixes...
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2019-04-16
Jim Procter
JAL-3196 change default are resource properties to...
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2019-04-16
gmungoc
Merge branch 'bug/JAL-3218scalePanelPopups' into develop
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2019-04-16
Jim Procter
Reinstate imports from "JAL-1889 JAL-3130 patch broken...
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2019-04-16
Jim Procter
JAL-1189 JAL-3130 patch broken tests
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2019-04-15
Ben Soares
JAL-3130 Somewhere in the old libs the Jws2 client...
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2019-04-15
Ben Soares
JAL-3130 Helper classes to take Class Exceptions when...
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2019-04-15
Ben Soares
JAL-3130 some clover fixes for helplinks. Use 'gradle...
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2019-04-15
gmungoc
JAL-3193 no separatge EnsemblGenomes source in Sequence...
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2019-04-15
Ben Soares
JAL-3130 adapted getdown src. attempt 2. first attempt...
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2019-04-15
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-04-14
Jim Procter
JAL-3130 write clover.xml during cloverReport phase
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2019-04-14
Jim Procter
JAL-3130 make sure testng-results.xml is generated
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2019-04-12
Jim Procter
JAL-3130 specify module list when launching new Jalview...
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2019-04-12
Jim Procter
JAL-3130 instrument main and compile separately to...
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2019-04-12
Jim Procter
JAL-3130 gradle test now runs open clover 4.3.1 and...
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2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
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2019-04-11
Jim Procter
JAL-3130 ensure J11 libs/modules are added when buildin...
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2019-04-11
Jim Procter
JAL-3130 clean up eclipse class path for dependencies...
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2019-04-10
gmungoc
JAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org
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2019-04-10
gmungoc
JAL-3018 REST version updated to 10.0
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2019-04-10
Jim Procter
JAL-3033 and more classes for examples core
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2019-04-09
Jim Procter
JAL-3033 jalview.org/jalview-js/JalviewJS.shtml?open...
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2019-04-09
hansonr
JTable improvements
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2019-04-09
hansonr
better comment regarding setting recognized ajax-enable...
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2019-04-09
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
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2019-04-09
hansonr
code formatting only
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2019-04-08
Jim Procter
JAL-3033 more classes for the kitchen sink
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2019-04-08
Jim Procter
JAL-3033 updated classlist for loading the example...
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2019-04-05
hansonr
File caching activated explicitly in Platform
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2019-04-05
Ben Soares
JAL-3130 adapted getdown src
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2019-04-05
hansonr
Fix for #196 EBI does not allow AJAX on Tools/dbfetch...
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2019-04-05
hansonr
command line fix
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2019-04-05
Ben Soares
JAL-3130 This commit concentrates on the Mac OS X DMG...
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2019-04-05
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
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2019-04-05
hansonr
fixes for Jalview command-line URI code
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2019-04-05
gmungoc
JAL-3204 update to uniprot schema
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2019-04-04
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
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2019-04-04
hansonr
j2sNative cleanup; fix for JTextArea preferred height...
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2019-04-04
gmungoc
JAL-3220 j2sIgnore on 3 more main methods
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2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
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2019-04-04
gmungoc
JAL-3220 unneeded main methods removed
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2019-04-04
Ben Soares
JAL-3130 trying to be Java 1.8 source compatible -...
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2019-04-04
Ben Soares
JAL-3130 JAL-3007 more files needed for getdown launcher
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2019-04-04
Ben Soares
JAL-3130 JAL-3007 improvements to gradle build
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2019-04-04
gmungoc
Merge branch 'develop' into Jalview-JS/develop
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2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
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2019-04-03
hansonr
removing early SplitPane SwingJS hack
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2019-04-03
gmungoc
JAL-3021 show Sequence Details with cursor at top
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2019-04-03
hansonr
j2sNative clean-up. Fixes problem with second try of...
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2019-04-02
hansonr
#210 Fixes Ensembl fetch problem (really)
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2019-04-02
gmungoc
JAL-3218 allow both Hide and Reveal in scale panel...
bug/JAL-3218scalePanelPopups
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2019-04-01
Ben Soares
JAL-3130 JAL-3007 Added gradle build for Java 11. Now...
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2019-04-01
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
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2019-04-01
hansonr
note to self: Time to write a good interface and stop...
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2019-04-01
Jim Procter
JAL-3033 generalised publish-core-template ready to...
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2019-04-01
Jim Procter
JAL-3033 always run the toJs core file build before...
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2019-04-01
Ben Soares
JAL-3130 JAL-3007 Added gradle build for Java 11 and...
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2019-04-01
gmungoc
JAL-3032 use small example Ensembl gene for JalviewJS
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2019-04-01
hansonr
updated _j2sclasslist.txt adds a few more files (see...
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2019-04-01
hansonr
embedded core-file demo for faster loading
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2019-04-01
hansonr
Ajax enhancements
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2019-04-01
hansonr
first demo of embedding components as simple divs with...
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2019-04-01
hansonr
jsmol2.php?? must have been just for testing
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2019-04-01
hansonr
JSON refactoring of a few methods; fixing JavaScript...
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2019-04-01
hansonr
jalview-pca-div added
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2019-04-01
hansonr
Merge branch 'Jalview-JS/develop' of https://source...
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2019-03-31
Jim Procter
JAL-3033 build.xml:build-site runs build-site.xml to...
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2019-03-31
hansonr
adds TreePanel name jalview-tree
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2019-03-31
hansonr
adds StructureViewer name jalview-structureviewer
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2019-03-31
hansonr
adds SplitFrame name jalview-splitframe;
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2019-03-31
hansonr
adds RnaStructureViewer name jalview-rnastructureviewer;
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2019-03-31
hansonr
adds Desktop name jalview-desktop;
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2019-03-31
hansonr
adds AlignFrame name jalview-alignment;
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2019-03-31
hansonr
clean up implicit object refs
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2019-03-31
hansonr
Cache JS adds search of Info for jalview_xxx properties
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2019-03-31
hansonr
#210 Ensembl fix; adds embedding test
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2019-03-29
gmungoc
Merge branch 'Jalview-JS/develop' of https://source...
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