jalview.git
2007-11-12 jprocterjavadoc
2007-11-08 jprocterend must be greater than blockstart
2007-11-08 jprocterinitialise treeCanvas before starting loading thread
2007-11-07 jprocterfix accidental breakage of annotation panel redraw...
2007-11-07 jprocterattempt to make fastPaint method thread safe
2007-11-05 jprocterrefactored syncing of alignment sequences - still buggy
2007-11-05 jproctervamsas connects and updates are threaded with a progres...
2007-11-05 jprocterupdated build with requesttoclose event being raised...
2007-10-31 jprocterjavadoc
2007-10-31 jprocterrejiggered loadDataFile and parseFeatureFile so JNet...
2007-10-31 jprocteradded bugfix todo
2007-10-31 jprocterconcise files can now be read as a normal alignment...
2007-10-31 jprocteradded a quieter bailout for cases when the featuresFile...
2007-10-31 jprocterfactored out reference to parent alignFrame (so all...
2007-10-31 jprocterbeginnings of view definition capability for annotation...
2007-10-31 jprocterjavadoc
2007-10-31 jproctererror message associated with an alignment file loading...
2007-10-31 jprocterintroduce new type to pass around featureRendererSettings
2007-10-31 jprocternullpointer bug fix on consensus thread
2007-10-31 jprocterjavadoc on webservice discovery method
2007-10-31 jprocterfix parsing of embl entries like S75919 which have...
2007-10-29 jprocterbugfix for alignments without aligned codon frames
2007-10-28 jprocterbegin process of allowing for column selection in wrapp...
2007-10-28 jprocterfix display of hidden sequence markers in applet
2007-10-27 jproctermust do any modification to menus before they are embed...
2007-10-27 jprocternew option on annotation export dialog box
2007-10-27 jprocterenabled platform dependent embedding of menuBar with...
2007-10-27 jprocterwindowclose handler now calls EmbmenuFrame garbage...
2007-10-27 jprocterfixed bootstrap value rendering to occur only when...
2007-10-27 jprocterrefactored embedded menu machinery
2007-10-26 jprocteradd mac dependent use of embedded menu bar rather than...
2007-10-26 jprocteruse new utility class for platform info
2007-10-26 jprocternew applet and application utility class for platform...
2007-10-26 jprocterfixed applet API calls so they operate on the embedded...
2007-10-26 jprocterupdated client which allows XML validation flags to...
2007-10-24 jprocterthread for product retrieval
2007-10-24 jprocterensure PDB ids are updated on the dataset sequence
2007-10-24 jprocterindividual query error/exception report and bugfix
2007-10-24 jprocteradd parsed PDB reference to sequences
2007-10-24 jprocternull pointer exception and warning for update of tree
2007-10-24 jprocterjavadoc
2007-10-19 jproctertest autobuild of release
2007-10-19 jproctercontains java properties read by ant build automation
2007-10-19 jprocterfile containing the cvs tag for the latest release
2007-10-15 jprocternew features or newly shown group features are placed...
2007-10-12 jprocteradded separator parameter with default of '|' to contro...
2007-10-11 jprocterremove conflict on javascript api
2007-10-11 jprocterjavac.debug passed through to applet build to preserve...
2007-10-11 jprocterstatic debug flag controlling output of excessive info...
2007-10-11 jprocterpass up the errormessage in the exception when a dataso...
2007-10-10 jprocterjnlp amsa extension and donotobfuscate property conditi...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-10-04 jprocterselected region output also supports generation of...
2007-10-04 jprocterrefactored list of file extensions and file format...
2007-10-04 jprocteredit label/displayChar contains existing character...
2007-10-04 jprocterrefactored invertColumnSelection as an object method
2007-10-02 jprocteradded colSel as a parameter formatAdaptor print functio...
2007-10-02 jprocterconvenience constructor for duplicating an annotation...
2007-10-02 jprocterjavadoc and operator for editing AlignmentAnnotation...
2007-10-02 jprocterjavadoc
2007-09-29 jprocteralways update PDBEntry list if DBRefEntries might have...
2007-09-29 jprocterupdatePDBEntry method to add any PDBEntry from the...
2007-09-29 jprocteruse pdb refsource string
2007-09-29 jprocterjavadoc
2007-09-29 jprocterfriendlier sequence names for protein products
2007-09-28 jprocterbetter support for TreeNode binding
2007-09-28 jprocterjavadoc for jalview_properties tags
2007-09-27 jprocterswitched to apache zip tool for doc IO
2007-09-27 jproctermodifiable lock check
2007-09-25 jprocterascii file
2007-09-25 jprocterbeginning of vamsas/local object synchronization patter...
2007-09-25 jprocteradded store of undo/redo hash for each alignment so...
2007-09-25 jprocterprimitive methods for getting current undo/redo state...
2007-09-18 jprocterfix class-cast exception and added beginnings of DBRef...
2007-09-18 jprocterpathological vamsas archive update fix ?
2007-09-14 jprocterascii file
2007-09-14 jprocteradded support for loading a vamsas document into a...
2007-09-14 jprocterbetter reproduction of compact newick files (removal...
2007-09-10 jprocterchoose a particular vamsas session, load, or create...
2007-09-10 jprocterensure dbrefs are added to dataset sequence.
2007-09-07 jprocterclient update to fix appData read triggering document...
2007-09-07 jprocterformatting and ensure that dataset is actually searched...
2007-09-07 jprocteradded action for saving the current session as a vamsas...
2007-09-07 jprocterMaps are usually added to DbRefs which are added to...
2007-09-07 jprocteradded a more general DBRef search interface
2007-09-06 jprocterbootstrap regex 'fixed' and ugly hack to try and get...
2007-09-06 jprocterargs for emblfile parser main method
2007-09-06 jprocterfixes bootstrap bug noted by Chunlong Chen in email...
2007-09-04 jprocterremoved href in the jnlp generation
2007-09-04 jprocterbasic fix for pfelkers problem with ':' in the last...
2007-09-04 jproctergff parsing when no start or end position is defined.
2007-08-31 jprocteradded CSV export of annotation rows to application.
2007-08-31 jprocterappdata bugfix in vamsas client library
2007-08-30 jprocter*really* make sure database references are stored and...
2007-08-30 jprocterensure codon mappings and database references are merge...
2007-08-30 jproctersequenceMappings go on boh datasets involved in a mappi...
2007-08-30 jprocterrefactored and ensured alCodonMappings are propagated...
2007-08-30 jprocterstore dataset references, sequence dataset ids, and...
2007-08-30 jprocterimproved vamsas treenode node binding support
2007-08-30 jproctermoved dataset sequence creation onto sequence method
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