jalview.git
2023-12-20 Ben SoaresJAL-4238 Marked where JalviewJS is hanging on 3DBeacons...
2023-12-20 Ben SoaresJAL-4059 Added some more Platform.addJ2SDirectDatabaseC...
2023-12-20 Ben SoaresJAL-4328 Move the examples links to a sensible place...
2023-12-15 Ben SoaresJAL-4059 Only run this once
2023-12-15 Ben SoaresJAL-4059 Use namespaced query parameters in preference...
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being...
2023-12-14 James ProcterJAL-4356 update release notes
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before...
2023-12-14 James ProcterJAL-4217 singleThread all tests
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-4238_PAEs_not_being...
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being...
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into...
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling
2023-12-14 Ben SoaresJAL-4059 Improvement to launch indicator
2023-12-14 Ben SoaresJAL-4059 Updated swingjs and removed spare library...
2023-12-12 Ben SoaresJAL-4353 bigger tighter test
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is...
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_...
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to...
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary...
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
2023-12-12 James ProcterJAL-4353 failing test
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files...
2023-12-11 James ProcterJAL-4192 more specific info about versions needed
2023-12-06 Ben SoaresJAL-4353 re-used random color code
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal...
2023-12-06 James ProcterJAL-4356 bump RELEASE
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3...
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into...
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into...
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random...
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
2023-12-04 Ben SoaresJAL-4059 Attempts to set JalviewJS desktop geometry...
2023-12-04 Ben SoaresJAL-4059 rename files from jsmol j2s zip from jsmol...
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version...
2023-11-30 James ProcterJAL-4351 update release notes for JAL-4342
2023-11-30 James ProcterMerge branch 'patch/JAL-4342_emptyannotationsexport...
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351
2023-11-30 James ProcterJAL-4351 2.11.3.2 scheduled for 1st December release
2023-11-30 James ProcterMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
2023-11-30 Ben SoaresMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless...
2023-11-29 Ben SoaresJAL-4059 Fixed a test for adding jalview.bin.JalviewJS bug/JAL-4344_structureimage_cl_arg_only_creating_background_colour_square
2023-11-29 Ben SoaresMerge branch 'bug/JAL-4238_PAEs_not_being_shown_in_Jalv...
2023-11-29 Ben SoaresJAL-4344 Some fixes of waiting blocks, and headless...
2023-11-27 Ben SoaresJAL-4238 minor errors fixed for JalviewJS structure...
2023-11-24 Ben SoaresJAL-4059 Allow form-created querystring style values...
2023-11-23 Ben SoaresJAL-4059 Storing important thisApplet information in...
2023-11-23 Ben SoaresJAL-4059 Made jalview.bin.JalviewJS to use new command...
2023-11-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being...
2023-11-23 Ben SoaresJAL-4059 rename vars to j2s_ this and that for clarity
2023-11-22 Ben SoaresJAL-4059 Send bespoke Info hash parameters into jalview...
2023-11-22 James ProcterJAL-4343 fix insufficient-caffeine error - add whats...
2023-11-22 James ProcterJAL-4343 release today, update notes for JAL-4348 and...
2023-11-22 James ProcterMerge branch 'patch/JAL-4345_pae_epas1_doubleclick...
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick
2023-11-21 Ben SoaresJAL-4238 an attempt to set JalviewJS desktop overflow...
2023-11-21 Ben SoaresJAL-4238 Changing visibility of locateInRange(int)...
2023-11-21 Ben SoaresJAL-4238 example file added to exmaples
2023-11-21 Ben SoaresJAL-4238 test files for PAE in jalviewjs
2023-11-21 Ben SoaresJAL-4059 updated swingjs, Jmol-SwingJS.zip. Insignifica...
2023-11-20 Ben SoaresJAL-4348 Add newer versions of Chimera and ChimeraX...
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature...
2023-11-17 James ProcterJAL-4343 release notes for JAL-4340 and JAL-4243
2023-11-17 James ProcterJAL-4343 bump version
2023-11-16 Ben SoaresJAL-4243 Updated bio.tools record for 2.11.3.0
2023-11-16 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being...
2023-11-16 Ben SoaresJAL-4340 Change launch scripts to be xresources to...
2023-11-16 Ben SoaresJAL-4238 ignore thread.sleeps in jalviewjs. Added a...
2023-11-16 Ben SoaresMerge branch 'bug/JAL-4059_update_swingJS_for_JalviewJS...
2023-11-16 Ben SoaresJAL-4059 Revert libjs/MiGLayout as new miglayout transp...
2023-11-15 James ProcterJAL-4090 JAL-4334 patch in release notes
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur...
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport...
2023-11-15 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being...
2023-11-15 James ProcterJAL-4273 actually pass startSeq etc on to rendering...
2023-11-15 James ProcterJAL-4090 fix up release notes new known issues
2023-11-15 James ProcterJAL-4222 bail if we wait too long for Jmol to save... patch/JAL-4222_100s_timeout_on_imagexport
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console...
2023-11-15 James ProcterJAL-4090 JAL-4334 position status when start, end or... bug/JAL-4334_unknownstartenduniprotfeatures
2023-11-15 Ben SoaresJAL-3836 Allow .ext.gz files to be recognised in the...
2023-11-15 James ProcterJAL-4090 JAL-4338 known defect
2023-11-15 James ProcterJAL-4090 release 15th November 2023
2023-11-15 James ProcterJAL-4090 JAL-3858 fix up PAE docs - drop the EBI image...
2023-11-15 Ben SoaresMerge branch 'bug/JAL-4059_update_swingJS_for_JalviewJS...
2023-11-15 Ben SoaresJAL-4059 update intervalstore-1.2-site.zip transpiled...
2023-11-15 Ben SoaresMerge branch 'feature/JAL-3576intervalStore_1_2' into...
2023-11-14 Ben SoaresJAL-4238 examples files for PAE
2023-11-14 Ben SoaresJAL-4059 added test for <br/> break
2023-11-13 Ben SoaresMerge branch 'bug/JAL-4059_update_swingJS_for_JalviewJS...
2023-11-13 Ben SoaresJAL-4059 fix other PopupMenuTest
2023-11-13 James ProcterMerge branch 'develop' into bug/JAL-4059_update_swingJS...
2023-11-13 Ben SoaresJAL-4059 revert to intervalstore 1.1 for VCFLoader
2023-11-13 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS...
2023-11-13 Ben SoaresJAL-4059 fixed a test that is now working as expected...
2023-11-13 Ben SoaresJAL-4059 Fix the tooltip formatting for when, e.g....
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