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jalview.git
2018-11-19 Jim ProcterJAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 JAL-2773 don’t need to call paintAlignment... commit | commitdiff | tree | snapshot
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation commit | commitdiff | tree | snapshot
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag commit | commitdiff | tree | snapshot
2018-11-09 Jim ProcterJAL-3127 polished setColor after review commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second... commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough... commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... commit | commitdiff | tree | snapshot
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... commit | commitdiff | tree | snapshot
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... commit | commitdiff | tree | snapshot
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 unit tests updated for code changes! commit | commitdiff | tree | snapshot
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF commit | commitdiff | tree | snapshot
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. commit | commitdiff | tree | snapshot
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. commit | commitdiff | tree | snapshot
2018-10-23 Ben SoaresBackupFilter and other unfinished business commit | commitdiff | tree | snapshot
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... commit | commitdiff | tree | snapshot
2018-10-22 Ben SoaresJAL-3141 Tidying commit | commitdiff | tree | snapshot
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 always look up sequence ID colour from view... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 tidy up terminology in colour schemes help... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 updated colours menu and tree view documentation commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 reinstate ability to set sequence ID colour... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... commit | commitdiff | tree | snapshot
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... commit | commitdiff | tree | snapshot
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... commit | commitdiff | tree | snapshot
2018-10-09 Jim ProcterJAL-3127 Colour sequences by ID - need to check that... commit | commitdiff | tree | snapshot
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... commit | commitdiff | tree | snapshot
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... commit | commitdiff | tree | snapshot
2018-10-08 gmungocJAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg commit | commitdiff | tree | snapshot
2018-10-08 gmungocJAL-1244 editSequence extract method refactoring commit | commitdiff | tree | snapshot
2018-10-05 gmungocJAL-1244 improved status message for insert/delete gap commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-3132 status message for sequence and/or graph group... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-1244 no status message (yet) for locked edit of... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-1244 status message for insert/delete gaps on singl... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-1244 status message while dragging a stretch group commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... commit | commitdiff | tree | snapshot
2018-10-04 gmungocJAL-3093 unit tests, no mouse action over left/right... commit | commitdiff | tree | snapshot
2018-10-03 gmungocJAL-3093 tweaks to code and test for 3px gap above... commit | commitdiff | tree | snapshot
2018-10-02 gmungocJAL-3093 unit tests for SeqPanel.findMousePosition commit | commitdiff | tree | snapshot
2018-10-02 gmungocJAL-3093 limited Consensus popup menu when in wrapped... commit | commitdiff | tree | snapshot
2018-10-02 gmungocJAL-3093 added MousePos.isOverAnnotation() for extra... commit | commitdiff | tree | snapshot
2018-10-01 gmungocJAL-3093 'read-only' annotations when in wrapped mode commit | commitdiff | tree | snapshot
2018-10-01 gmungocJAL-3093 refactor (+test) Annotation Labels tooltip... commit | commitdiff | tree | snapshot
2018-10-01 gmungocJAL-3093 unit tests for finding annotation row index... commit | commitdiff | tree | snapshot
2018-10-01 gmungocJAL-3093 show annotation tooltips and status message... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin... commit | commitdiff | tree | snapshot
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... commit | commitdiff | tree | snapshot
2018-09-27 gmungocJAL-2791 new method to test if feature fails colour... commit | commitdiff | tree | snapshot
2018-09-27 gmungocJAL-2791 method that tests all conditions for feature... commit | commitdiff | tree | snapshot
2018-09-26 gmungocJAL-3125 tidy up commit | commitdiff | tree | snapshot
2018-09-26 gmungocJAL-3125 avoid slider 'rounding' threshold field value commit | commitdiff | tree | snapshot
2018-09-24 gmungocJAL-3063 tidy commented out code commit | commitdiff | tree | snapshot
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... commit | commitdiff | tree | snapshot
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 tweaks to help text for filters commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... commit | commitdiff | tree | snapshot
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 top level element added to colours schema... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 New View via JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume... commit | commitdiff | tree | snapshot
2018-09-18 Jim ProcterJAL-3035 more dedasification commit | commitdiff | tree | snapshot
2018-09-18 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 test method renamed to match code commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB commit | commitdiff | tree | snapshot
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff | tree | snapshot
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 gmungocJAL-1551 reinstated Save actions commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth commit | commitdiff | tree | snapshot
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