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jalview.git
2009-02-24 jprocteronly display unique url links (both in label and in... commit | commitdiff | tree | snapshot
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec... commit | commitdiff | tree | snapshot
2009-02-24 jprocterchange method signature to allow caller to test if... commit | commitdiff | tree | snapshot
2009-02-24 jprocterbugfix the bugfix commit | commitdiff | tree | snapshot
2009-02-24 jprocterallow label to be set independently of parsed input... commit | commitdiff | tree | snapshot
2009-02-24 jprocterbug fixes (infinite loop when fetcher given same sequen... commit | commitdiff | tree | snapshot
2009-02-06 jprocterupdated jalview reference commit | commitdiff | tree | snapshot
2009-02-06 jprocterupdated binding commit | commitdiff | tree | snapshot
2009-02-06 jprocterfix occasional nullpointer ref when seq ID retrieval... commit | commitdiff | tree | snapshot
2009-02-06 jproctershowUnconserved and updated reference commit | commitdiff | tree | snapshot
2009-02-06 jproctershowunconserved preference commit | commitdiff | tree | snapshot
2009-02-06 jproctershowUnconserved group attribute commit | commitdiff | tree | snapshot
2009-02-06 jproctershowUnconserved IO commit | commitdiff | tree | snapshot
2009-02-06 jproctershowUnconserved view and group setting commit | commitdiff | tree | snapshot
2009-02-06 jproctershow unconserved gui and annotation file attribute commit | commitdiff | tree | snapshot
2009-02-06 jprocteradded showUnconserved property to group and view attributes commit | commitdiff | tree | snapshot
2009-01-09 jprocterhack to completely disable calculation of consensus... commit | commitdiff | tree | snapshot
2009-01-09 jprocterbugfix commit | commitdiff | tree | snapshot
2009-01-08 jprocterfix broken parsing of non-positional features in GFF... commit | commitdiff | tree | snapshot
2009-01-08 jprocterstructure ids are not IDs, but simply references commit | commitdiff | tree | snapshot
2009-01-08 jprocterrefactor commit | commitdiff | tree | snapshot
2009-01-07 jprocteradded links to the das settings help, and explanation... commit | commitdiff | tree | snapshot
2009-01-07 jprocterensure that the DAS sequence source checkbox is checked... commit | commitdiff | tree | snapshot
2009-01-07 jproctercheck for features on the retrieved sequences commit | commitdiff | tree | snapshot
2009-01-07 jprocterrefactor commit | commitdiff | tree | snapshot
2009-01-07 jprocteradded higher level method to enable the display of... commit | commitdiff | tree | snapshot
2008-12-19 jprocterjustify cannot be undone - commented out menu items... commit | commitdiff | tree | snapshot
2008-12-19 jprocterexperimental: sort by feature UI in feature settings... commit | commitdiff | tree | snapshot
2008-12-19 jprocternew sort by length method, justify edit menu entries... commit | commitdiff | tree | snapshot
2008-12-19 jproctercatch null pointer exception when no colourscheme is... commit | commitdiff | tree | snapshot
2008-12-19 jproctersimple transformation of feature types like dbref and... commit | commitdiff | tree | snapshot
2008-12-19 jproctertodo commit | commitdiff | tree | snapshot
2008-12-19 jprocterwsdbfetch parameter change again (uniprotkb is dbname... commit | commitdiff | tree | snapshot
2008-12-19 jprocteravoid null pointer exception when no features visible commit | commitdiff | tree | snapshot
2008-12-19 jprocteravoid null pointer exception when groupName is not set commit | commitdiff | tree | snapshot
2008-12-19 jprocterleft and right justify method commit | commitdiff | tree | snapshot
2008-12-19 jproctersort by length commit | commitdiff | tree | snapshot
2008-12-15 jprocteradded (and enabled) switch to store gff source string... commit | commitdiff | tree | snapshot
2008-12-15 jproctertemporary fix and note about null feature group mucking... commit | commitdiff | tree | snapshot
2008-12-15 jprocterwarning for failed parsing of newick strings commit | commitdiff | tree | snapshot
2008-12-15 jprocternew callback handler allowing threads that request... commit | commitdiff | tree | snapshot
2008-12-15 jprocterstructureState element to structure view Id is a many... commit | commitdiff | tree | snapshot
2008-12-08 jprocterDAS feature scores are parsed into floats on sequence... commit | commitdiff | tree | snapshot
2008-12-08 jprocteroutput average score to stdout commit | commitdiff | tree | snapshot
2008-12-08 jprocterdisplay feature score in tooltip commit | commitdiff | tree | snapshot
2008-12-08 jprocterorder by feature documentation commit | commitdiff | tree | snapshot
2008-12-08 jprocterexperimental buttons for sort on score/density and... commit | commitdiff | tree | snapshot
2008-12-08 jprocternew sort functions for ordering sequence by annotated... commit | commitdiff | tree | snapshot
2008-12-05 jprocteradded location of menu option and keystroke commit | commitdiff | tree | snapshot
2008-12-05 jproctersupport for multiple accession retrieval from a databas... commit | commitdiff | tree | snapshot
2008-12-04 jprocteradded local das sequence source CLI and documentation commit | commitdiff | tree | snapshot
2008-12-04 jprocterfetch database references for all EBI db + selected... commit | commitdiff | tree | snapshot
2008-12-04 jproctersequence fetchers generated for local das sequence... commit | commitdiff | tree | snapshot
2008-12-04 jprocterdas source browser uses local source method from jalvie... commit | commitdiff | tree | snapshot
2008-12-04 jprocterallow sequence source to be specified as sequence:mydas... commit | commitdiff | tree | snapshot
2008-12-04 jprocterlocal das source properties string constants and routin... commit | commitdiff | tree | snapshot
2008-12-04 jprocterproperly catch exceptions from querying server with... commit | commitdiff | tree | snapshot
2008-12-04 jprocterminimise exceptions for bad uniprot ids commit | commitdiff | tree | snapshot
2008-12-04 jprocterselect source by implementation class commit | commitdiff | tree | snapshot
2008-12-04 jprocterfix null pointer exception for sources which don't... commit | commitdiff | tree | snapshot
2008-12-04 jprocterclarity of tree menu calculation widget name commit | commitdiff | tree | snapshot
2008-12-01 jproctermatch case switch should work for both sequence ID... commit | commitdiff | tree | snapshot
2008-11-12 jprocterbeginning documentation for new hidecol/hiderep and... commit | commitdiff | tree | snapshot
2008-11-12 jproctertodo for documenting selection sharing commit | commitdiff | tree | snapshot
2008-11-12 jprocterautoscroll option commit | commitdiff | tree | snapshot
2008-11-12 jprocternew capabilities and note on 'try vamsas' commit | commitdiff | tree | snapshot
2008-11-12 jprocternew features/resolved for 2.4.1. commit | commitdiff | tree | snapshot
2008-11-12 jprocterrefactored to propery separate addToDocument,addFromDoc... commit | commitdiff | tree | snapshot
2008-11-12 jprocternew viewport IDs and jalview XML storage/sync in vamsas... commit | commitdiff | tree | snapshot
2008-11-12 jprocterselection sending and receiving, autoscrolling to highl... commit | commitdiff | tree | snapshot
2008-11-12 jprocterselection sending and receiving, autoscrolling to highl... commit | commitdiff | tree | snapshot
2008-11-12 jprocterselection sending commit | commitdiff | tree | snapshot
2008-11-12 jprocternew ID constructor and selection sending commit | commitdiff | tree | snapshot
2008-11-12 jprocternew constructors for setting IDs commit | commitdiff | tree | snapshot
2008-11-12 jprocternew window discovery and alignment view navigation... commit | commitdiff | tree | snapshot
2008-11-12 jprocterjar inputstream provider enabling multiple jar entries... commit | commitdiff | tree | snapshot
2008-11-12 jprocterautomatic scrolling switch commit | commitdiff | tree | snapshot
2008-11-12 jprocterupdated library supporting exchange of selection messages commit | commitdiff | tree | snapshot
2008-11-12 jprocterautomatic scrolling option added to view commit | commitdiff | tree | snapshot
2008-11-12 jprocterjdk1.2 compatibility commit | commitdiff | tree | snapshot
2008-11-12 jprocterminor translation bug commit | commitdiff | tree | snapshot
2008-11-12 jprocterjavadoc commit | commitdiff | tree | snapshot
2008-11-12 jprocterjalview XML schema update for 2.4.1 (or 2.5?) introduci... commit | commitdiff | tree | snapshot
2008-11-12 jprocternew listener/sender for selection events commit | commitdiff | tree | snapshot
2008-11-12 jproctergracefully translate ambigous nucleotides as 'X' commit | commitdiff | tree | snapshot
2008-11-12 jprocterbugfix to safely deal with server exception resulting... commit | commitdiff | tree | snapshot
2008-11-12 jprocteradded todo regarding import of GFF2 key=value attributes commit | commitdiff | tree | snapshot
2008-11-12 jprocteravoid exception if search returns valid object but... commit | commitdiff | tree | snapshot
2008-11-12 jprocternew copy constructor and intersect method commit | commitdiff | tree | snapshot
2008-11-12 jprocterinvolvesSequence to check if searchResults intersect... commit | commitdiff | tree | snapshot
2008-11-12 jprocterjavadoc and new method to get alignment sequence index... commit | commitdiff | tree | snapshot
2008-11-04 jprocterbugfix db ref retrieve routine so it removes dead query... commit | commitdiff | tree | snapshot
2008-11-04 jprocterimplemented embl validation properly commit | commitdiff | tree | snapshot
2008-11-04 jprocterimplemented embl validation properly commit | commitdiff | tree | snapshot
2008-11-04 jprocterlinks for non-positional features commit | commitdiff | tree | snapshot
2008-11-04 jproctercomment about escaping regex properly commit | commitdiff | tree | snapshot
2008-11-04 jprocteroptional display of database refs and non-positional... commit | commitdiff | tree | snapshot
2008-11-04 jprocteroptional display of database refs and non-positional... commit | commitdiff | tree | snapshot
2008-11-04 jprocterbeginning of implementation of new properties for hide... commit | commitdiff | tree | snapshot
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from... commit | commitdiff | tree | snapshot
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