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jalview.git
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 updated tests for 3db fetcher’s working FTS... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core commit | commitdiff | tree | snapshot
2021-08-30 arngucciJAL-3829_spike minor changes commit | commitdiff | tree | snapshot
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters commit | commitdiff | tree | snapshot
2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spik... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy commit | commitdiff | tree | snapshot
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... commit | commitdiff | tree | snapshot
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop commit | commitdiff | tree | snapshot
2021-04-01 ArnaldoJAL-3829 attempt to fix my changes to follow the Jira... commit | commitdiff | tree | snapshot
2021-03-29 Arnaldofixed last commit commit | commitdiff | tree | snapshot
2021-03-29 ArnaldoRequest now parses the whole structures, need to fix... commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoTDB.executeRequest fix & test passed commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoAdded (and passed !)all the FTS tests from test.fts... commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoCreated 3Dbeacons data_columns.txt Test passed for... commit | commitdiff | tree | snapshot
2021-03-15 Arnaldoadded untracked parsing attempts files commit | commitdiff | tree | snapshot
2021-03-15 ArnaldoAdding tests for 3DB, currently 2/4 corrects on PanelTest commit | commitdiff | tree | snapshot
2021-03-02 ArnaldoFirst commit of 3DB FTS Panel & Restclient commit | commitdiff | tree | snapshot
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... commit | commitdiff | tree | snapshot
2021-02-10 Ben SoaresJAL-3521 Changed wording of INSTALLATION in source... commit | commitdiff | tree | snapshot
2021-02-08 Ben SoaresJAL-3521 Adding a build_properties into sourceDist... commit | commitdiff | tree | snapshot
2021-02-05 gmungocJAL-2422 updated unit test for ChimeraX command change Develop-2_11_2_0-d20210205 commit | commitdiff | tree | snapshot
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3796_notarization_no_uninstaller... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'task/JAL-3805_Remove_Uninstall_Old_Jalvie... commit | commitdiff | tree | snapshot
2021-01-28 Jalview Development... Merge branch 'develop' into task/JAL-3796_notarization_... commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Updating file opening marker to %u commit | commitdiff | tree | snapshot
2021-01-26 Ben SoaresJAL-3521 Debian mime-type and desktop helper files... commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Smaller DMG Finder windows for all DS_Store... task/JAL-3805_Remove_Uninstall_Old_Jalview_application_for_develop_branch commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 New DS_Store for smaller DMG Finder window commit | commitdiff | tree | snapshot
2021-01-22 Ben SoaresJAL-3805 Remove Uninstall Old Jalview.app in Release_2_... commit | commitdiff | tree | snapshot
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... commit | commitdiff | tree | snapshot
2021-01-14 Jalview Development... JAL-3796 update to Install4j 8.0.10 and add config... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... commit | commitdiff | tree | snapshot
2021-01-11 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3783 Reverting to using groovy-all-2.4.12-indy... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3628 Test for doubly saved single backup file scheme commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... commit | commitdiff | tree | snapshot
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Defintely want SplashScreen to appear in the... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Changed building.md to describe -PCHANNEL... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Changed building.md to reflect change of name... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... commit | commitdiff | tree | snapshot
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresJAL-3594 Better Jalview Develop banner commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresJAL-3594 Documentation added to building.md for using... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'task/JAL-3594_updated--CHANNEL_cosmetics... commit | commitdiff | tree | snapshot
2020-12-10 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 Improved About banners for develop and test... commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 Images for splash screen commit | commitdiff | tree | snapshot
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresJAL-3594 Change main window title commit | commitdiff | tree | snapshot
2020-12-08 Ben SoaresJAL-3594 DMG fixes commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3754 Fixed jar task creating strange dir because... commit | commitdiff | tree | snapshot
2020-12-07 Ben SoaresJAL-3754 Fixed jar task creating strange dir because... commit | commitdiff | tree | snapshot
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3754 fixed a problem with jar task creating a stray... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3775 added the Platform.isLinux() check for test... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Generating GIMP XCF files for getdown and... commit | commitdiff | tree | snapshot
2020-12-04 Ben SoaresJAL-3594 Release images and channel properties commit | commitdiff | tree | snapshot
2020-12-03 Ben SoaresJAL-3594 New way for build.gradle to override propertie... commit | commitdiff | tree | snapshot
2020-12-02 Ben SoaresJAL-3594 new logos, icons and cosmetics for getdown... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3594 Different icon/getdown styling when launching... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresMerge branch 'develop' into merge/develop_and_rebase_sq... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Updated getdown with re-factored... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3775 Adding Mockito jars for tests. Needed for... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using... commit | commitdiff | tree | snapshot
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line... commit | commitdiff | tree | snapshot
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using... commit | commitdiff | tree | snapshot
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3775 Re-compiled Getdown jars commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Help documentation updated commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... commit | commitdiff | tree | snapshot
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... commit | commitdiff | tree | snapshot
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... commit | commitdiff | tree | snapshot
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