jalview.git
2023-06-16 Ben SoaresJAL-3830 Take account of --gui taking precedence over...
2023-06-16 Ben SoaresJAL-3830 Look for --headless mode and add -Djava.awt...
2023-06-16 Ben SoaresJAL-4001 make page_location the same encoding as the...
2023-06-15 Ben SoaresJAL-4001 Changed for Java 8 compatibility
2023-06-14 Ben SoaresJAL-4001 Trying to see extra information in GA dashboard
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-13 Ben SoaresJAL-3599 Tidyup for all OS to use ScheduledExecutor
2023-06-12 Ben SoaresJAL-3599 replaced a build dependency for jalviewjsLaunc...
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. ScheduledExecutor timeout...
2023-06-11 Ben SoaresJAL-3599 Cater for macOS. --timeout not working yet
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails
2023-06-09 Ben SoaresJAL-3599 fixed placement of 'First Run' file for chromi...
2023-06-09 Ben SoaresJAL-3599 --no-sandbox --disable-gpu and Thorium flatpak...
2023-06-09 Ben SoaresJAL-3599 STDOUT and STDERR saved and sent to System...
2023-06-09 Ben SoaresJAL-3599 Not redirecting STDOUT or STDERR just for...
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when anything
2023-06-09 Ben SoaresJAL-3599 More stderr/stdout output to logs when failed
2023-06-09 Ben SoaresJAL-3599 increase real and virtual time chrome runs...
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in...
2023-06-08 Ben SoaresJAL-4001 Only send defaultParams for application_launch...
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-08 Ben SoaresJAL-3416 FlatLaf SystemInfo failing in JalviewJS. ...
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-08 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-06-07 Ben SoaresJAL-4001 Javadoc for the method to use
2023-06-07 James ProcterJAL-4195 add exception handling for all image output...
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into...
2023-06-07 James ProcterJAL-4195 catch thrown exceptions (if any) during image...
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... improvement/JAL-4193_cl_arg_prevent_startup_file
2023-06-07 Ben SoaresJAL-4001 Added more params for application_launch
2023-06-07 Ben SoaresJAL-4001 removed a test param
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin...
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised...
2023-06-06 James ProcterJAL-4160 --colour can now take user defined scheme...
2023-06-06 James ProcterJAL-4160 JAL-4195 wait around until alignFrame calculat...
2023-06-06 James ProcterJAL-1551 formatting and javadoc for ArgParser rather...
2023-06-06 James ProcterJAL-629 - remove TODO from jalview.bin.Jalview since...
2023-06-06 James ProcterJAL-4195 Debug message indicating creation of an image...
2023-06-06 James ProcterJAL-1551 a bit of javadoc for Jalview.testoutput methods
2023-06-05 Ben SoaresJAL-4001 debugging statements
2023-06-05 Ben SoaresJAL-4001 untested GA4 client code
2023-06-05 Ben SoaresJAL-4001 most of google analytics client
2023-06-05 Ben SoaresJAL-4001 start of GA4 client class
2023-06-02 James ProcterJAL-4090 update 2.11.3.0 release notes for recent merges
2023-06-02 Ben SoaresJAL-3521 Updated debian build.gradle in utils/debian...
2023-06-02 Ben SoaresJAL-4001 Spanish translation
2023-06-02 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl...
2023-06-01 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg...
2023-06-01 Ben SoaresJAL-629 changes merged in from develop fixed it. Delet...
2023-06-01 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-06-01 Ben SoaresJAL-629 fixing test EBIAlphaFoldTest.checkImportPAEToSt...
2023-06-01 Ben SoaresJAL-4001 Changed title+message to MessageManager
2023-06-01 Ben SoaresJAL-629 added data for test
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache...
2023-06-01 James ProcterMerge branch 'features/JAL-4134_use_annotation_row_for_...
2023-06-01 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot...
2023-06-01 James ProcterJAL-4134 properly resolve positions in associated align... features/JAL-4134_use_annotation_row_for_colours_and_groups
2023-06-01 Ben SoaresJAL-629 better reference text for --nousagestats
2023-05-30 James ProcterJAL-4134 repaint the tree or alignment view(s) when...
2023-05-30 James ProcterJAL-4134 highlight selected column nodes on the linked...
2023-05-30 Ben SoaresJAL-629 JAL-4121 Added documentation to Help docs and...
2023-05-30 Ben SoaresJAL-4121 adjust test name
2023-05-30 Ben SoaresJAL-629 Better formatting of Arg.Opt options in usage...
2023-05-30 Ben SoaresJAL-4121 slight refactoring of method name and added...
2023-05-29 James ProcterJAL-4190 - escape clears selected nodes
2023-05-29 James ProcterJAL-4134 JAL-2349 test & fixed implementation(ish)...
2023-05-29 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot...
2023-05-27 Ben SoaresJAL-4121 Added a NPE check caught in tests. Added ...
2023-05-27 Ben SoaresJAL-4121 Store Arg.Opts in bootstrapArgs. Change Opt...
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added...
2023-05-26 James ProcterJAL-4134 internationalise popup menu entries and show...
2023-05-26 James ProcterJAL-1556 fix bad import
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot...
2023-05-26 James ProcterJAL-1556 initial implementation - no tests as yet but...
2023-05-26 Ben SoaresJAL-629 dispose of non-displaying StructureChooser...
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries
2023-05-25 Ben SoaresJAL-3416 JAL-3820 FlatLaf default for everyone, includi...
2023-05-25 Ben SoaresJAL-3416 better path name
2023-05-25 James ProcterJAL-4134 popup menu and annotation row property to...
2023-05-25 Ben SoaresJAL-3820 JAL-3830 improvements to script launching...
2023-05-25 James ProcterJAL-2381 don’t need to set description, dbrefs etc...
2023-05-25 James ProcterJAL-2381 copy and paste sequence also copies contact...
2023-05-25 James ProcterMerge branch 'bug/JAL-4186_space_in_sequence_name_cause...
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to...
2023-05-25 Ben SoaresJAL-3416 remove old flatlaf jars from j8lib
2023-05-25 Ben SoaresJAL-4186 fixed a test
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers...
2023-05-24 Ben SoaresJAL-4186 attempts to work in jalviewjs, still not working
2023-05-24 Ben SoaresJAL-4186 fix dialog. broken in JalviewJS
2023-05-24 Ben SoaresJAL-3416 slightly improved colours for tabber pane...
2023-05-24 Ben SoaresJAL-3416 Updated flatlaf libraries. Native libraries...
2023-05-23 Ben SoaresJAL-629 Updated help docs and fixed structure image...
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting...
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args.
2023-05-22 James ProcterJAL-4134 map between column and node selections better...
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