jalview.git
2006-11-06 amwaterhouseOnly calculate consenus from start to end
2006-11-06 amwaterhouseIf start is not zero, we need to put -- at the start
2006-11-06 amwaterhouseexample links
2006-11-06 amwaterhouseRemember fileName in alignFrame
2006-11-06 amwaterhousedont limit menu size
2006-11-06 amwaterhouseaccelerators, save menu item
2006-11-03 amwaterhouseAlignpanel is not new if copied from j2xml
2006-11-03 amwaterhouseConsensus may already have been removed
2006-11-03 amwaterhouseRemove unnecessary refresh
2006-11-03 amwaterhouseUse Jalview2XML to copy AlignmentPanel
2006-11-02 amwaterhousereturn if image is null
2006-11-02 amwaterhouseUpdate editMenuBar after alignment changed
2006-11-02 amwaterhouseSet menu state in alignFrame
2006-11-02 amwaterhouseFire align change for case change
2006-11-02 amwaterhouseHistory is per viewport
2006-11-02 amwaterhouseselected states set in updateMenusFromViewport
2006-11-02 amwaterhouseUse system path separator char
2006-11-02 amwaterhousedasregistry is now dasregistry.org
2006-10-30 amwaterhouseFix for feature name amended
2006-10-30 amwaterhouseshift I to inverse sequence selection
2006-10-30 amwaterhouseAppend html
2006-10-30 amwaterhouseUpdate features
2006-10-30 amwaterhouseconservation lock
2006-10-30 amwaterhousedeleteSequenceFeature
2006-10-27 amwaterhouseRemove consensus annotation if out of memory
2006-10-27 amwaterhouseupdatingConsensus, updatingConservation is static ...
2006-10-27 amwaterhousePaintRefresher can calculate seqs added or removed
2006-10-27 amwaterhouseDont remove or add PaintRefresher registrations for...
2006-10-27 amwaterhouse-1 error
2006-10-27 amwaterhouseReset colour schemes and alignmentChanged moved to...
2006-10-27 amwaterhouseIf sequence is null, dont add it
2006-10-27 amwaterhouseNew padgaps works out number of gaps to insert, delete
2006-10-27 amwaterhouseRename old properties file before writing new
2006-10-27 amwaterhouseFocus listener on Tabbed pane, gives keyboard focus...
2006-10-26 amwaterhouseOnly adds history item if size>0
2006-10-26 amwaterhouseReturns number of columns deleted
2006-10-26 amwaterhouseRemove system.out
2006-10-26 amwaterhousevoid changeCase(ActionEvent e
2006-10-26 amwaterhouseset quality to null if removed
2006-10-26 amwaterhouseshowConservation, quality, identity not used
2006-10-26 amwaterhouseDont readd the undo
2006-10-26 amwaterhousecheck command.string[i] is not null
2006-10-26 amwaterhouseSequence length maybe less than end
2006-10-26 amwaterhouseError message changed
2006-10-26 amwaterhouseSequences may be hidden, not in this aligment
2006-10-26 amwaterhouseInvert accelerators
2006-10-26 amwaterhousesequence may be null if hidden or deleted
2006-10-26 amwaterhouseSet alignFrame of gathered panels to be the source...
2006-10-26 amwaterhouseremove gaps size range
2006-10-26 amwaterhouseNo need to reduce length if inserting more gaps at...
2006-10-26 amwaterhouseCheck if hiddenSequence has been deleted
2006-10-26 amwaterhouseKnown bugs fixed
2006-10-26 amwaterhouseDont scroll off width-1
2006-10-25 amwaterhouseWe can delete sequence 0
2006-10-25 amwaterhouseReturn if negative width, ie alignment deleted
2006-10-25 amwaterhouseCheck hiddenSequence before placing in tmp
2006-10-25 amwaterhouseGet sequence in routine
2006-10-25 amwaterhouseviewport.hasHiddenColumns updated after undo/redo performed
2006-10-25 amwaterhouseEditCommand added to AlignFrame
2006-10-25 amwaterhouseAdjusts columnSelection correctly
2006-10-25 amwaterhouseAdjusts hiddenColumns correctly
2006-10-25 amwaterhousemore accelerators
2006-10-24 amwaterhouseOnly send one call per sequence at the moment
2006-10-24 amwaterhouseShowConservation, quality, identity not used
2006-10-24 amwaterhouseMust set alignIndex before delete takes place
2006-10-24 amwaterhouseUse EditCommand.Cut
2006-10-24 amwaterhouseHistoryItem replaced by CommandI
2006-10-24 amwaterhouseEditCommand implemented
2006-10-24 amwaterhousemust translate graphics back the same amountcvs diff...
2006-10-24 amwaterhouseChange Case is undoable
2006-10-24 amwaterhouseSequenceIndex might be beyond old height
2006-10-24 amwaterhouseMust catch image outOfMemoryError
2006-10-24 amwaterhousechangeCase, removeGaps moved to commands package
2006-10-24 amwaterhousemaxIdLength redundant, deleteCols, trimLeft, removeGaps...
2006-10-24 amwaterhouseUses RemoveGapsCommand
2006-10-24 amwaterhouseRemove variables not used
2006-10-24 amwaterhouseRemove unneccessary import
2006-10-24 amwaterhouseMake everything final
2006-10-24 amwaterhouseNew accelerators
2006-10-24 amwaterhouseCommented out for compilation
2006-10-24 amwaterhousesetOrder is public
2006-10-24 amwaterhouseCommands which can be done, or undone
2006-10-24 amwaterhouseIts historycvs remove jalview/datamodel/HistoryItem...
2006-10-24 jprocterfixes bug reported by Christopher Tan (help@jalview...
2006-10-18 amwaterhouseWait for response from server before next sequence
2006-10-18 amwaterhouseshowqual, showcons never used
2006-10-18 amwaterhouseremove html and body from tooltip
2006-10-18 amwaterhousenew feature args
2006-10-18 amwaterhouseCan set description for new features
2006-10-18 amwaterhouseFaded anntotations when recalculating
2006-10-18 amwaterhouseset conserve and quality null if outofmemory
2006-10-18 amwaterhouseNo longer a FeatureListener
2006-10-18 amwaterhouseparseDescriptionHTML
2006-10-18 amwaterhousedraw text after linkimage
2006-10-18 amwaterhouseRemove system.out
2006-10-18 amwaterhouseGerneral XML parse error
2006-10-15 jprocterfixed array out of bounds exception in copy constructor
2006-10-12 amwaterhouseshowQuality may be updated during archive file load
2006-10-12 amwaterhouseConvenient function findEndRes
2006-10-12 amwaterhouseAdd features from Popupmenu
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