| 2006-11-06 |
amwaterhouse | Only calculate consenus from start to end |
commit | commitdiff | tree | snapshot |
| 2006-11-06 |
amwaterhouse | If start is not zero, we need to put -- at the start |
commit | commitdiff | tree | snapshot |
| 2006-11-06 |
amwaterhouse | example links |
commit | commitdiff | tree | snapshot |
| 2006-11-06 |
amwaterhouse | Remember fileName in alignFrame |
commit | commitdiff | tree | snapshot |
| 2006-11-06 |
amwaterhouse | dont limit menu size |
commit | commitdiff | tree | snapshot |
| 2006-11-06 |
amwaterhouse | accelerators, save menu item |
commit | commitdiff | tree | snapshot |
| 2006-11-03 |
amwaterhouse | Alignpanel is not new if copied from j2xml |
commit | commitdiff | tree | snapshot |
| 2006-11-03 |
amwaterhouse | Consensus may already have been removed |
commit | commitdiff | tree | snapshot |
| 2006-11-03 |
amwaterhouse | Remove unnecessary refresh |
commit | commitdiff | tree | snapshot |
| 2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | return if image is null |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | Update editMenuBar after alignment changed |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | Set menu state in alignFrame |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | Fire align change for case change |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | History is per viewport |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | selected states set in updateMenusFromViewport |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | Use system path separator char |
commit | commitdiff | tree | snapshot |
| 2006-11-02 |
amwaterhouse | dasregistry is now dasregistry.org |
commit | commitdiff | tree | snapshot |
| 2006-10-30 |
amwaterhouse | Fix for feature name amended |
commit | commitdiff | tree | snapshot |
| 2006-10-30 |
amwaterhouse | shift I to inverse sequence selection |
commit | commitdiff | tree | snapshot |
| 2006-10-30 |
amwaterhouse | Append html |
commit | commitdiff | tree | snapshot |
| 2006-10-30 |
amwaterhouse | Update features |
commit | commitdiff | tree | snapshot |
| 2006-10-30 |
amwaterhouse | conservation lock |
commit | commitdiff | tree | snapshot |
| 2006-10-30 |
amwaterhouse | deleteSequenceFeature |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | Remove consensus annotation if out of memory |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | updatingConsensus, updatingConservation is static ... |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | PaintRefresher can calculate seqs added or removed |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | Dont remove or add PaintRefresher registrations for... |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | -1 error |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | Reset colour schemes and alignmentChanged moved to... |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | If sequence is null, dont add it |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | Rename old properties file before writing new |
commit | commitdiff | tree | snapshot |
| 2006-10-27 |
amwaterhouse | Focus listener on Tabbed pane, gives keyboard focus... |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Only adds history item if size>0 |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Returns number of columns deleted |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Remove system.out |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | void changeCase(ActionEvent e |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | set quality to null if removed |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | showConservation, quality, identity not used |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Dont readd the undo |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | check command.string[i] is not null |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Sequence length maybe less than end |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Error message changed |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Sequences may be hidden, not in this aligment |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Invert accelerators |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | sequence may be null if hidden or deleted |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Set alignFrame of gathered panels to be the source... |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | remove gaps size range |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | No need to reduce length if inserting more gaps at... |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Check if hiddenSequence has been deleted |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Known bugs fixed |
commit | commitdiff | tree | snapshot |
| 2006-10-26 |
amwaterhouse | Dont scroll off width-1 |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | We can delete sequence 0 |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Return if negative width, ie alignment deleted |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Check hiddenSequence before placing in tmp |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Get sequence in routine |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | viewport.hasHiddenColumns updated after undo/redo performed |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | EditCommand added to AlignFrame |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Adjusts columnSelection correctly |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | Adjusts hiddenColumns correctly |
commit | commitdiff | tree | snapshot |
| 2006-10-25 |
amwaterhouse | more accelerators |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Only send one call per sequence at the moment |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | ShowConservation, quality, identity not used |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Must set alignIndex before delete takes place |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Use EditCommand.Cut |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | HistoryItem replaced by CommandI |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | EditCommand implemented |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | must translate graphics back the same amountcvs diff... |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Change Case is undoable |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | SequenceIndex might be beyond old height |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Must catch image outOfMemoryError |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | changeCase, removeGaps moved to commands package |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Uses RemoveGapsCommand |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Remove variables not used |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Remove unneccessary import |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Make everything final |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | New accelerators |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Commented out for compilation |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | setOrder is public |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Commands which can be done, or undone |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
amwaterhouse | Its historycvs remove jalview/datamodel/HistoryItem... |
commit | commitdiff | tree | snapshot |
| 2006-10-24 |
jprocter | fixes bug reported by Christopher Tan (help@jalview... |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Wait for response from server before next sequence |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | showqual, showcons never used |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | remove html and body from tooltip |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | new feature args |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Can set description for new features |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Faded anntotations when recalculating |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | set conserve and quality null if outofmemory |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | No longer a FeatureListener |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | parseDescriptionHTML |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | draw text after linkimage |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Remove system.out |
commit | commitdiff | tree | snapshot |
| 2006-10-18 |
amwaterhouse | Gerneral XML parse error |
commit | commitdiff | tree | snapshot |
| 2006-10-15 |
jprocter | fixed array out of bounds exception in copy constructor |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | showQuality may be updated during archive file load |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Convenient function findEndRes |
commit | commitdiff | tree | snapshot |
| 2006-10-12 |
amwaterhouse | Add features from Popupmenu |
commit | commitdiff | tree | snapshot |
| next |
git://source.jalview.org / jalview.git / shortlog