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jalview.git
2022-01-26
Jim Procter
JAL-3746 note about adding JAL-3700,JAL-3751,JAL-3763...
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2022-01-26
Jim Procter
Merge branch 'merge/develop_task/JAL-3763_newDatasetFor...
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2022-01-26
Jim Procter
JAL-3763 (for whatever reason) need to increase timeout...
merge/develop_task/JAL-3763_newDatasetForCds
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2022-01-26
Jim Procter
Merge branch 'task/JAL-3763_newDatasetForCds' into...
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2022-01-26
gmungoc
JAL-3806 (2.11.2 version) more lax allowance (3 positio...
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2022-01-26
Jim Procter
JAL-3806 JAL-3725 propagate relaxed criteria for stop...
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2022-01-26
gmungoc
JAL-3725 restrict mapped virtual feature location to...
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2022-01-26
gmungoc
JAL-3725 helper methods for computing mapped feature...
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2022-01-26
gmungoc
JAL-3725 exclude stop codon from CDS-to-protein mapping
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2022-01-26
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-26
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch'
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2022-01-18
Jim Procter
JAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-18
Jim Procter
JAL-3940 errant heading in release notes..
releases/Release_2_11_1_Branch
Release_2_11_1_7
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2022-01-18
Jim Procter
Merge branch 'patch/r2_11_1_branch_JAL-3703_closing_fil...
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2022-01-17
Jim Procter
JAL-3703 patch Windows save file test for 2.11.1 codebase
patch/r2_11_1_branch_JAL-3703_closing_files
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2022-01-17
Jim Procter
Merge branch 'patch/r2_11_1_branch_JAL-3703_closing_fil...
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2022-01-17
Jim Procter
JAL-3940 fix issues in release notes
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2022-01-17
Jim Procter
JAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-17
Jim Procter
JAL-3940 bump version and update release notes - releas...
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2022-01-17
Jim Procter
JAL-3940 update release notes for JAL-3702,JAL-3935...
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2022-01-17
Ben Soares
JAL-3703 Test that fails in Windows only, and only...
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2022-01-17
Ben Soares
JAL-3703 fix Gff3 shared InputStream with embedded...
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2022-01-17
Ben Soares
close filehandles straight after parse, without setting...
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2022-01-17
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-17
Jim Procter
JAL-3746 possible release date 1st Feb 2022
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2022-01-17
Jim Procter
JAL-3746 Release notes for patch JAL-3702 JAL-3915
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2022-01-17
Jim Procter
Merge branch 'bug/JAL-3703_saving_a_file_in_Windows_10_...
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2022-01-12
Ben Soares
JAL-3703 Test that fails in Windows only, and only...
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2022-01-11
Ben Soares
JAL-3703 fix Gff3 shared InputStream with embedded...
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2022-01-11
Ben Soares
close filehandles straight after parse, without setting...
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2022-01-11
Ben Soares
JAL-3937 update releases.html
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2022-01-10
Ben Soares
JAL-3937 enable AIA download of intermediate certificat...
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2022-01-10
Ben Soares
JAL-3937 enable AIA download of intermediate certificat...
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2022-01-06
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-06
Jim Procter
JAL-3746 update release history for 2.11.1.5 and 2...
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2022-01-06
Jim Procter
JAL-3934 update whats new
Release_2_11_1_6
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2022-01-06
Jim Procter
Merge branch 'critical/JAL-3933_log4j_update_for_develo...
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2022-01-06
Jim Procter
Merge branch 'task/JAL-3934_update_log4j_again' into...
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2022-01-06
Jim Procter
JAL-3934 trigger patch release for log4j version bump
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2021-12-22
Ben Soares
Merge branch 'develop' into critical/JAL-3933_log4j_upd...
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2021-12-22
Ben Soares
JAL-3934 updated log4j from 2.16.0 to 2.17.0
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2021-12-22
Ben Soares
JAL-3934 updated log4j from 2.16.0 to 2.17.0
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2021-12-22
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch'
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2021-12-20
Jim Procter
JAL-3842 remove replacement tokens in html text - not...
Release_2_11_1_5
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2021-12-20
Jim Procter
JAL-3842 patch what’s new text
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2021-12-20
Jim Procter
JAL-3842 release 2.11.1.5 release notes
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2021-12-20
Jim Procter
Merge branch 'critical/JAL-3933_log4shell_mitigation...
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2021-12-15
Ben Soares
JAL-3933 updated THIRDPARTYLIBS
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2021-12-15
Ben Soares
JAL-3933 updated THIRDPARTYLIBS
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2021-12-15
Ben Soares
JAL-3933 updated THIRDPARTYLIBS
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2021-12-15
Ben Soares
JAL-3933 updated THIRDPARTYLIBS
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2021-12-15
Jim Procter
JAL-3933 remove obsolete Castor logging configuration
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2021-12-15
Jim Procter
JAL-3933 configure root logger console appender to...
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2021-12-15
Jim Procter
JAL-3933 remove obsolete Castor logging configuration
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2021-12-15
Jim Procter
JAL-3933 configure root logger console appender to...
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2021-12-14
Ben Soares
JAL-3933 updated log4j and slf4j jars with log4j1.2...
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2021-12-14
Ben Soares
JAL-3933 updated slf4j to 1.7.32
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2021-12-14
Ben Soares
JAL-3933 Updated log4j jars with log4j-2.16.0 and compa...
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2021-12-13
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-12-13
Jim Procter
JAL-3829 isCanonical should by default be false - ensur...
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2021-12-13
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-12-13
Jim Procter
JAL-3855 JAL-3829 don’t need to make up alphafold model...
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2021-12-13
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-12-13
Jim Procter
JAL-3929 preserve lowercase pdbid in group name for...
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2021-12-08
Jim Procter
Merge branch 'to_merge/r2_11_2/JAL-3904_improved_alignp...
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2021-12-08
Jim Procter
JAL-3551 pymol docs - work in progress
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2021-12-08
Jim Procter
JAL-3929 don’t use the url encoded pdbId in feature...
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2021-12-08
Jim Procter
JAL-3616 update messages/tooltips/menu items to use...
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2021-12-08
Jim Procter
JAL-3551 JAL-3931 view pymol commands/responses in...
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2021-12-08
Jim Procter
JAL-3931 remove % and - from ids so Pymol doesn’t strip...
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2021-12-08
Jim Procter
JAL-3929 URLencode pdbid to remove problematic characte...
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2021-12-07
Ben Soares
JAL-3930 Added a customizedId="JALVIEW" to launcher...
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2021-12-07
Ben Soares
JAL-3930 Added a customizedId="JALVIEW" to launcher...
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2021-12-02
Jim Procter
JAL-3904 use new AlignPanel API method
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2021-12-02
Jim Procter
JAL-3904 simple method to make an alignPanel the curren...
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2021-11-29
Ben Soares
JAL-3594 correct Jalview Develop logo SVG added in...
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2021-11-25
Ben Soares
JAL-3553 added filesize to json
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2021-11-19
Jim Procter
JAL-3926 disable autosearch by default
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2021-11-19
Ben Soares
JAL-3553 now creating a json file for use on website...
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2021-11-16
Ben Soares
JAL-3553 copy sha256sums to a versioned filename too...
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2021-11-16
Ben Soares
JAL-3553 added customized labels for install4j output.txt
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2021-11-16
Ben Soares
JAL-3553 improve the labels in install4j's output.txt...
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2021-11-08
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-08
Jim Procter
JAL-3855 verify pdb suffix is preserved when locally...
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2021-11-08
Jim Procter
JAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil...
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2021-11-08
Jim Procter
JAL-3855 try harder to ignore DNA/RNA only structures...
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2021-11-08
Jim Procter
JAL-3921 wait around until session file has been written
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2021-11-05
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-05
Jim Procter
JAL-3829 remove duplicate IDs in 3DBeacons generated...
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2021-11-05
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-05
Jim Procter
JAL-3829 format and tidy up unused code
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2021-11-05
Jim Procter
JAL-3919 use model format field to ensure we get the...
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2021-11-05
Jim Procter
JAL-3875 fully reset filter combo-box when fetch 3d...
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2021-11-05
Ben Soares
JAL-3746 Updated help docs for 3D-Beacons. Added and...
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2021-11-03
Jim Procter
JAL-3915 JAL-3746 documentation for removed rnaview...
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2021-11-03
Jim Procter
JAL-3916 TODO for improved selection of covering structures
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2021-11-03
Jim Procter
JAL-3916 TODO for improved selection of covering structures
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2021-11-03
Jim Procter
JAL-3915 remove RNAview opts from preferences. Still...
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2021-11-02
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-02
Jim Procter
Merge branch 'develop' of https://source.jalview.org...
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