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jalview.git
8 days ago Jim ProcterMerge branch 'spikes/JAL-4366_3di_msa_forfoldseeks... spike/JAL-4366_JAL-4386_JAL-4435_expandedmsafromstructure commit | commitdiff | tree | snapshot
8 days ago Jim ProcterMerge branch 'develop' into features/JAL-4366_foldseek_... features/JAL-4366_foldseek_3di_viewing commit | commitdiff | tree | snapshot
10 days ago Jim ProcterJAL-2275 JAL-3921 JAL-4077 release notes JAL-4090 develop commit | commitdiff | tree | snapshot
10 days ago Jim ProcterMerge branch 'patch/JAL-4077_jmolsaveloadwindows' into... commit | commitdiff | tree | snapshot
10 days ago Jim ProcterJAL-4077 JAL-1551 formatting patch/JAL-4077_jmolsaveloadwindows commit | commitdiff | tree | snapshot
10 days ago Jim ProcterJAL-4077 JAL-3921 TRACE level reporting of Jmol modelfi... commit | commitdiff | tree | snapshot
10 days ago Jim ProcterJAL-3921 escape and transform file paths for Jmol scrip... commit | commitdiff | tree | snapshot
10 days ago Jim ProcterJAL-4077 JAL-3921 match up transformed windows filepath... commit | commitdiff | tree | snapshot
10 days ago Jim ProcterJAL-4077 translate between Java/windows and Jmol 14... commit | commitdiff | tree | snapshot
11 days ago Jim ProcterJAL-4077 additional trace output to help track down... commit | commitdiff | tree | snapshot
11 days ago Jim ProcterJAL-4077 JAL-3921 even more generous incremental backof... commit | commitdiff | tree | snapshot
11 days ago Jim ProcterJAL-4077 patched sessionSave(File ) command and test... commit | commitdiff | tree | snapshot
12 days ago Jim ProcterJAL-4482 JAL-4490 release notes commit | commitdiff | tree | snapshot
12 days ago Jim ProcterMerge branch 'bug/JAL-4482_gradle_task_linkCheck_fails... commit | commitdiff | tree | snapshot
12 days ago Jim ProcterJAL-4490 JAL-4474 release notes (preemptive but hopeful... commit | commitdiff | tree | snapshot
12 days ago Jim ProcterMerge branch 'JAL-4474_jalview.ps1_not_working' into... commit | commitdiff | tree | snapshot
12 days ago Jim ProcterJAL-4490 release notes for JAL-4485 et al. commit | commitdiff | tree | snapshot
12 days ago Jim ProcterMerge branch 'improvement/JAL-4485_not_finding_chimerax... commit | commitdiff | tree | snapshot
12 days ago Jim ProcterJAL-4490 bump version and release notes commit | commitdiff | tree | snapshot
12 days ago Ben SoaresJAL-4482 make the dummy whatsNew.html file HTML with... bug/JAL-4482_gradle_task_linkCheck_fails commit | commitdiff | tree | snapshot
2024-11-07 Renia CorreyaJAL-4435 Menu option and colouring for sec struct providers feature/JAL-4386_JAL-4435_reformat_node_labels commit | commitdiff | tree | snapshot
2024-11-06 Ben SoaresJAL-4485 Tests for FileUtils.getMatchingVersionedFilesT... improvement/JAL-4485_not_finding_chimerax_on_managed_desktop commit | commitdiff | tree | snapshot
2024-11-06 Ben SoaresJAL-4485 Not using whitelist, just file glob and blacklist commit | commitdiff | tree | snapshot
2024-11-06 Ben SoaresJAL-4485 Better var name and using FileUtils method... commit | commitdiff | tree | snapshot
2024-11-06 Ben SoaresJAL-4485 Extracted the whitelist/blacklist fileglob... commit | commitdiff | tree | snapshot
2024-11-06 Ben SoaresJAL-4485 Fix the template path for Windows Chimera... commit | commitdiff | tree | snapshot
2024-11-06 Ben SoaresJAL-4487 Escape backslash file separators when looking... commit | commitdiff | tree | snapshot
2024-11-05 Ben SoaresJAL-4485 Path fix for macOS Application*s* commit | commitdiff | tree | snapshot
2024-11-05 Ben SoaresJAL-4485 Initially look for all installations of Chimer... commit | commitdiff | tree | snapshot
2024-11-01 Ben SoaresJAL-4485 Extra debugging for Chimera/X and PyMol launches commit | commitdiff | tree | snapshot
2024-11-01 Ben SoaresJAL-4474 Added -Force option to all Get-Item calls... commit | commitdiff | tree | snapshot
2024-10-29 James ProcterJAL-4473 JAL-4467 release notes commit | commitdiff | tree | snapshot
2024-10-29 James ProcterMerge branch 'bug/JAL-4467_getdownArchive_task_fails... commit | commitdiff | tree | snapshot
2024-10-28 James ProcterJAL-4473 release date 29th Oct 2024 commit | commitdiff | tree | snapshot
2024-10-28 James ProcterJAL-4473 release notes for JAL-4380 commit | commitdiff | tree | snapshot
2024-10-28 Ben SoaresJAL-4380 Improved annotation tooltips especially second... commit | commitdiff | tree | snapshot
2024-10-28 Ben SoaresJAL-4380 Added information to annotation tooltips when... commit | commitdiff | tree | snapshot
2024-10-25 James ProcterMerge branch 'patch/fix_JAL-4470_JAL-4471_for_2_11_4_1... commit | commitdiff | tree | snapshot
2024-10-18 Renia CorreyaMerge branch 'feature/JAL-4476_reformat_ss_consensus_an... commit | commitdiff | tree | snapshot
2024-10-18 Renia CorreyaMerge branch 'feature/JAL-4386_JAL-4435_coloured_lines_... commit | commitdiff | tree | snapshot
2024-10-16 Renia CorreyaJAL-4435 Append numbers to group names if there is... commit | commitdiff | tree | snapshot
2024-10-16 Renia CorreyaJAL-4435 Added Show Secondary Structure Providers menu... commit | commitdiff | tree | snapshot
2024-10-11 Renia CorreyaJAL-4435 Added coloured dashed lines for secondary... feature/JAL-4386_JAL-4435_coloured_lines_for_providers commit | commitdiff | tree | snapshot
2024-10-08 Renia CorreyaJAL-4476 Reformat secondary structure consensus annotat... feature/JAL-4476_reformat_ss_consensus_annotation_labels commit | commitdiff | tree | snapshot
2024-10-08 Renia CorreyaJAL-4435 Reformatting tree node labels and tree sub... commit | commitdiff | tree | snapshot
2024-10-04 Jim ProcterJAL-4473 whatsNew 2.11.4.1 patch/fix_JAL-4470_JAL-4471_for_2_11_4_1 commit | commitdiff | tree | snapshot
2024-10-04 Jim ProcterJAL-4473 new jalview patch release commit | commitdiff | tree | snapshot
2024-10-04 Jim Procterfix for JAL-4471 - secondary structure similarity tree... commit | commitdiff | tree | snapshot
2024-10-04 Jim ProcterJAL-4470 fix: check for workers!=null before checking... commit | commitdiff | tree | snapshot
2024-09-20 Ben SoaresJAL-4467 Take account of presource and xresource in... bug/JAL-4467_getdownArchive_task_fails commit | commitdiff | tree | snapshot
2024-09-18 Jim ProcterJAL-4418 release notes typos commit | commitdiff | tree | snapshot
2024-09-18 Jim ProcterJAL-4418 bump release date to 18th September 2024 commit | commitdiff | tree | snapshot
2024-09-18 Jim ProcterJAL-4418 fix up help TOC copypaste error commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 more documentation tweaks - getting Jen Flemin... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4428 CHANNEL=RELEASE has a different path... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 fix link case for linkcheck and window menu... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4159 pasimap viewer image for docs commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4090 known defect report for JAL-4349 commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4414 JAL-1054 fix irrelevant failing network test... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterMerge branch 'bug/JAL-1054_broken_test' into develop commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 documentation for 4461 commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 documentation for ss annotation row preference... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4442 quit racecondition patch commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterMerge branch 'JAL-4442_cant_quit_jalview_on_windows_11... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 release 2.11.4.0 today! commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterJAL-4418 JAL-4392 show/hide group associated secondary... commit | commitdiff | tree | snapshot
2024-09-17 Jim ProcterMerge branch 'improvement/JAL-4461_select_format_from_e... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterJAL-4392 JAL-4425 commented out code to allow consensus... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterMerge branch 'patch/JAL-4392_hide_ssconsensus_if_no_dat... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterJAL-4392 autohide the secondary structure consensus... patch/JAL-4392_hide_ssconsensus_if_no_data commit | commitdiff | tree | snapshot
2024-09-16 Renia CorreyaJAL-4427 Added test cases and a minor correction bug/JAL-4427_HTML_code_in_sequence_ID_text commit | commitdiff | tree | snapshot
2024-09-16 Jim ProcterJAL-4392 don't show SS consensus for DNA alignments commit | commitdiff | tree | snapshot
2024-09-16 Ben SoaresJAL-4461 Move SwingUtils to darrylbu.util.SwingUtils... improvement/JAL-4461_select_format_from_extension commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterJAL-4418 release notes for JAL-4461 - nb need to docume... commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterMerge branch 'improvement/JAL-4461_select_format_from_e... commit | commitdiff | tree | snapshot
2024-09-13 Ben SoaresJAL-4461 Tests for JalviewFileChooser.defaultSaveFileFo... commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterMerge branch 'feature/JAL-4386_JAL-4435_trees_from_anno... feature/JAL-4386_JAL-4435_trees_from_annotations_on_alignment_2114_update commit | commitdiff | tree | snapshot
2024-09-13 Ben SoaresJAL-4461 Adding in a number of properties that control... commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterMerge branch 'develop' into feature/JAL-4386_calculate_... commit | commitdiff | tree | snapshot
2024-09-13 Jim ProcterJAL-4418 sign off JAL-4454 and convert markdown header... commit | commitdiff | tree | snapshot
2024-09-13 Ben SoaresJAL-4461 Change JalviewFileFilter to use LinkedHashSet... commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterJAL-4418 sign off JAL-4427 JAL-4451 fix commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterMerge branch 'bug/JAL-4427_HTML_code_in_sequence_ID_tex... commit | commitdiff | tree | snapshot
2024-09-12 Ben SoaresJAL-4461 Added a dynamic tooltip to give more informati... commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterJAL-4461 fix up formatting and remove old comment commit | commitdiff | tree | snapshot
2024-09-12 Jim ProcterJAL-4461 after autodetection, update the filechooser... commit | commitdiff | tree | snapshot
2024-09-12 Ben SoaresJAL-4461 Change labelling of All-known-alignment-files... commit | commitdiff | tree | snapshot
2024-09-12 Ben SoaresJAL-4460 Don't display the All-known-alignment-files... bug/JAL-4460_alignment_save_as_format_not_registering commit | commitdiff | tree | snapshot
2024-09-12 Jim Procter JAL-4454 make sure 2.11.4.0-test is stripped - *for... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4418 release notes for JAL-4460 commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterMerge branch 'bug/JAL-4460_alignment_save_as_format_not... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4454 make sure 2.11.4.0-test is stripped commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4460 In save as, set format from file extension... commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4460 Don't add .aln for an 'All known formats.... commit | commitdiff | tree | snapshot
2024-09-11 Ben SoaresJAL-4460 Update currentFileFormat /after/ new format... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4418 JAL-4428,JAL-4421,JAL-3393 release notes commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterMerge branch 'patch/JAL-4428_osx_codesigning_scripts... commit | commitdiff | tree | snapshot
2024-09-11 Jim ProcterJAL-4428 codesign jnilibs commit | commitdiff | tree | snapshot
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