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jalview.git
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2522 Missed fix to applet commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated... commit | commitdiff | tree | snapshot
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie... commit | commitdiff | tree | snapshot
2017-05-15 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-15 kiramtJAL-2388 Add missed optimisation commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi... commit | commitdiff | tree | snapshot
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl... commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2480 redundant code removed commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2418 broken help ref commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 documentation and what’s new commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mention new checkbox in linked cDNA/Protein... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 mention overview popup in documentation commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs... commit | commitdiff | tree | snapshot
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... commit | commitdiff | tree | snapshot
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-1632 correct i18n and NPE commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2403 use preferred factory method to create score... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetS... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null... commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in Sequenc... commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-2505 refactored SequenceFeature construction so... commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And applet commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... commit | commitdiff | tree | snapshot
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2505 delete and readd amended sequence feature commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2480 JAL-2505 guard against duplicating links commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2507 - resolve stockholm per residue annota... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'features/JAL-2473_set-minimium-dimensions... commit | commitdiff | tree | snapshot
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 show threshold slider for quantitative annotat... commit | commitdiff | tree | snapshot
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test commit | commitdiff | tree | snapshot
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList commit | commitdiff | tree | snapshot
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