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jalview.git
2024-06-05
Ben Soares
JAL-4420 Allow associated files to be dragged on separa...
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2024-06-05
Ben Soares
JAL-4409 Small refactoring of ArgParserUtils to allow...
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2024-05-29
Ben Soares
JAL-4409 Allow more URI schemes (e.g. file) to be opene...
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2024-05-29
Ben Soares
JAL-4409 Allow more URI schemes (e.g. file) to filter...
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2024-05-29
Ben Soares
JAL-4414 Add SocketTimeoutException to exceptions that...
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2024-05-29
Ben Soares
JAL-3196 Need more memory for the install4j process...
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2024-05-28
Ben Soares
JAL-4409 JAL-4160 Don't let getdown turn jalviewX:...
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2024-05-28
Ben Soares
JAL-4417 Use a specified props file for consistent...
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2024-05-28
Ben Soares
JAL-4409 TEMPORARY don't clean up image files from...
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2024-05-28
Ben Soares
JAL-4409 Ensure the specific scheme jalviewx is only...
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2024-05-28
Ben Soares
JAL-4409 Don't insist on HttpURLConnection, allows...
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2024-05-27
Ben Soares
Merge branch 'develop' into improvement/JAL-4409_implem...
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2024-05-21
Ben Soares
JAL-1054 Change one more (unused) url.openStream to...
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2024-05-21
Ben Soares
JAL-1054 Change the rest of the url.openConnection...
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2024-05-21
Ben Soares
JAL-4409 Adjust usage of HttpUtils.equivalentJalviewURL...
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2024-05-21
Ben Soares
JAL-4409 Make HttpUtils.equivalentJalviewUrlString...
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2024-05-21
Jim Procter
JAL-4356 release date for 2.11.3.3 is 22nd May 2025
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2024-05-20
Ben Soares
JAL-4409 Also interpret jalviewX:// URIs in Jalview...
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2024-05-20
Ben Soares
JAL-4397 Another fix on linux
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2024-05-17
Ben Soares
JAL-4420 Add some debugging statements
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2024-05-17
Ben Soares
JAL-4420 Tests for new FileUtils methods
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2024-05-17
Ben Soares
JAL-4420 Allow preprocessing of arguments if they are...
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2024-05-17
Ben Soares
JAL-4409 Checking getdown jars up to date
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2024-05-17
Ben Soares
JAL-3409 Add newline back into Buffered Reader in getdo...
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2024-05-17
Ben Soares
JAL-4409 corrected the umount of dmg to hdiutil detach...
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2024-05-16
Ben Soares
JAL-4409 Added remote JVL files for Linux/Windows
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2024-05-16
Ben Soares
JAL-4409 Added multiple file open to getdown. Added...
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2024-05-16
Jim Procter
JAL-4356 release notes for JAL-3978 patch
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2024-05-16
Jim Procter
Merge branch 'bug/JAL-3978_copy_bin_dir_to_getdownArchi...
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2024-05-16
Ben Soares
JAL-3978 Add the bin dir to be copied from website...
bug/JAL-3978_copy_bin_dir_to_getdownArchiveBuild_task
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2024-05-16
Ben Soares
JAL-4409 Easier full install from source for macOS
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2024-05-16
Ben Soares
JAL-4409 more places to check for jalviewd://
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2024-05-16
Jim Procter
JAL-4418 bump release to 2.11.4.0
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2024-05-16
Jim Procter
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-05-16
Jim Procter
Merge branch 'develop' into feature/JAL-4386_calculate_...
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2024-05-16
Jim Procter
JAL-4356 bump release date to today, release notes...
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2024-05-15
Ben Soares
JAL-4397 IdWidth tests slightly less restrictive for...
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2024-05-15
Ben Soares
JAL-4409 extra schemes now opening correctly in macos
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2024-05-15
Renia Correya
JAL-4386 Fixed failed test case
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2024-05-15
Jim Procter
Merge branch 'bug/JAL-4416_sview_not_shown_for_local_st...
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2024-05-15
Renia Correya
JAL-4386 Fixed failed test cases
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2024-05-15
Jim Procter
JAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a...
bug/JAL-4416_sview_not_shown_for_local_strucfile
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2024-05-15
Jim Procter
JAL-4416 ensure the structure view is shown and any...
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2024-05-15
Jim Procter
JAL-4416 make sure the structure viewer is actually...
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2024-05-15
Renia Correya
JAL-4386 Added preferences for secondary structure...
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2024-05-15
Ben Soares
JAL-4409 minor change for mac testing
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2024-05-15
Ben Soares
JAL-4409 Updated getdown classes
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2024-05-15
Ben Soares
JAL-4409 Refactoring to allow easier reuse of classes...
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2024-05-15
Jim Procter
Merge branch 'bug/JAL-4407_no_sec_str_from_draganddrop_...
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2024-05-15
Renia Correya
JAL-4386 - Implementation of retrieving secondary structure
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2024-05-14
Ben Soares
JAL-1054 JAL-4414 Tests for the HttpUtils redirect...
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2024-05-14
Ben Soares
JAL-1054 Also recognise UnknownHostException as a file...
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2024-05-14
Ben Soares
Merge branch 'develop' into improvement/JAL-4409_implem...
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2024-05-14
Ben Soares
JAL-4217 Upped the main testTask0 timeout to 15 minutes...
improvement/JAL-4217_added_a_timeout_to_tests
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2024-05-14
Ben Soares
JAL-1054 Tests for the HttpUtils redirection wrappers
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2024-05-14
Ben Soares
Merge branch 'bug/JAL-4397_failing_idWidth_tests' into...
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2024-05-14
Ben Soares
Merge branch 'develop' into bug/JAL-4397_failing_idWidt...
bug/JAL-4397_failing_idWidth_tests
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2024-05-14
Ben Soares
JAL-4414 Add a FileNotFoundException when identifying...
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2024-05-14
Jim Procter
JAL-4356 fix release note
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2024-05-14
Jim Procter
JAL-4356 set release date to Weds 15th May and update...
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2024-05-13
Jim Procter
JAL-4356 JAL-518 JAL-4413 release notes
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2024-05-13
Jim Procter
Merge branch 'features/JAL-518_justify_seqs_in_region...
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2024-05-13
Ben Soares
JAL-1054 Fix wrappers for following http->https redirects
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2024-05-13
Jim Procter
JAL-518 better test coverage and support for case prese...
features/JAL-518_justify_seqs_in_region
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2024-05-13
Jim Procter
JAL-518 failing test for case preservation on justify
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2024-05-13
Ben Soares
Merge branch 'develop' into improvement/JAL-4409_implem...
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2024-05-13
Renia Correya
Merge remote-tracking branch 'origin/develop' into...
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2024-05-13
Jim Procter
Merge branch 'develop' into features/JAL-518_justify_se...
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2024-05-13
Jim Procter
JAL-4413 timeouts Merge branch 'improvement/JAL-4217_ad...
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2024-05-13
Ben Soares
JAL-4409 Fix some file extensions (including remove...
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2024-05-13
Ben Soares
JAL-1054 Add wrappers for URL.openConnection(), URL...
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2024-05-13
Jim Procter
Merge branch 'develop' into features/JAL-518_justify_se...
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2024-05-13
Renia Correya
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-05-13
Renia Correya
JAL-4386 - Implementation of substitution matrix and...
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2024-05-10
Jim Procter
JAL-4411 fix typo :(
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2024-05-10
Jim Procter
JAL-4411 store class of provider in PDBEntry
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2024-05-10
Ben Soares
JAL-4409 Add jalviewhttp and jalviewhttps schemes to...
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2024-05-02
Ben Soares
JAL-4217 Sensible timeout for testTask0
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2024-05-02
Ben Soares
JAL-4217 Added a timeout for testTasks. If timeout...
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2024-05-01
Renia Correya
Merge remote-tracking branch 'origin/bug/JAL-4407_no_se...
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2024-05-01
Jim Procter
JAL-4407 don't transfer 'local' settings - leave as...
bug/JAL-4407_no_sec_str_from_draganddrop_to_msa
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2024-05-01
Jim Procter
JAL-4407 failing test checking for secondary structure...
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2024-04-30
Renia Correya
JAL-4392 Merging consensus secondary structure
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2024-04-30
Renia Correya
JAL-4386 Comparing secondary structure similarity direc...
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2024-04-27
Ben Soares
JAL-4397 Removed debugging statement
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2024-04-26
Ben Soares
JAL-4397 Adjustments for macOS HiDPI
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2024-04-26
Ben Soares
JAL-4397 Test all fixed on linux. Given leeway to...
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2024-04-26
Renia Correya
JAL-4386 Drop down for secondary structure sources...
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2024-04-24
Renia Correya
JAL-4386 PCA/Tree Calculation for Secondary Structures...
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2024-04-22
Ben Soares
JAL-4397 Allow some leeway in automatically calculated...
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2024-04-18
Ben Soares
JAL-4397 fixed testresetIdWidth() test on macos
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2024-04-16
Renia Correya
JAL-4386 Calculate tree using secondary structure annot...
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2024-03-13
Renia Correya
JAL-4386_Added changes in similarity score calculation...
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2024-03-08
Renia Correya
JAL-4386 Corrected failed test case.
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2024-03-08
Renia Correya
JAL-4386 Added further checks for sequences that have...
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2024-03-08
Renia Correya
JAL-4386 Calculate tree using secondary structure annot...
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2024-01-23
James Procter
JAL-4356 release notes
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2024-01-23
James Procter
JAL-4356 update release notes for 2.11.3.3
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2024-01-23
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2024-01-23
James Procter
Merge branch 'develop' into bug/JAL-4290_headless_align...
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