jalview.git
2007-01-29 amwaterhouseImage for labels, stops flickering
2007-01-29 amwaterhouseNew view copies annotations across
2007-01-29 amwaterhouseTooltips for group names, descriptions
2007-01-29 amwaterhouseDescription added
2007-01-29 amwaterhouseSequenceGroup parsing added to annotation file
2007-01-29 amwaterhouseID_ITALICS option in preferences
2007-01-29 amwaterhousescaleAbove, left and right set when tab selection changes
2007-01-29 amwaterhouseMarios annotation bug fixed
2007-01-26 amwaterhouseAnnotationId is hashcode of object
2007-01-26 amwaterhouseOnly set the sequence oncecvs diff datamodel/Alignment...
2007-01-26 amwaterhouseAdjusts annotations for sequence edits
2007-01-26 amwaterhouseIf its null, set tip empty
2007-01-26 jprocterpreliminary documentation for DNA->protein codon featur...
2007-01-26 jprocteradded doc for PDBResNum features
2007-01-25 amwaterhouseCommand takes alignment, not gapChar
2007-01-25 amwaterhouseAnnotations move when full alignment edited
2007-01-25 amwaterhouseAnnotation adjustment moved to EditCommand
2007-01-25 amwaterhouseRemove unneccessary lines
2007-01-25 amwaterhouseAlignmentAnnotations require id
2007-01-25 amwaterhouseAllow for hidden columns
2007-01-25 amwaterhouseOnly output visible annotations
2007-01-25 amwaterhouseload/get Annotation
2007-01-25 amwaterhouseRemove unnecessary line
2007-01-25 amwaterhouseOutput annotations
2007-01-25 amwaterhouse1.1 enabled
2007-01-25 jprocterreinstating class implementation.
2007-01-25 jprocterchecks for irreflexive mapping in main tester
2007-01-24 amwaterhouseConservation etc have autoCalculated flag set true
2007-01-24 amwaterhouseAdjustAnnotations needs position, number and insert
2007-01-24 amwaterhouseThis constructor is never called
2007-01-24 amwaterhouseFeatures output for javascript
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences
2007-01-24 amwaterhouseExtension to fastaFile for myhits
2007-01-24 jprocterrefactored to use jalview.analysis.Finder for searching...
2007-01-24 jprocterkkv change
2007-01-24 jprocterMap arbitrary series of non-overlapping integer interva...
2007-01-24 amwaterhousePage setup added
2007-01-23 amwaterhouseboolean for internal copies
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-23 jprocterrefactoring (added seqIndex/resIndex state for incremen...
2007-01-23 jprocterrefactored search algorithm from gui classes
2007-01-23 jproctertransfer resnum features now returns features (could...
2007-01-19 jprocterreoganization of PDB sequence fetching for sequence...
2007-01-19 jprocterPDBChain maintains reference to dataset of sequences...
2007-01-19 jprocterdatasetSequence derive method and some checks
2007-01-19 amwaterhouseexport features/annotations not for import
2007-01-19 amwaterhouseApplet can output and load annotations, features
2007-01-19 amwaterhouseNeeed to know protocol for annotation loading
2007-01-19 amwaterhouseNeed to know protocol to load anntotations
2007-01-19 jprocterjavadoc
2007-01-19 jprocteradded sequence feature copy constructor.
2007-01-18 jproctertransfer and update of sequenceFeatures for associated...
2007-01-18 jprocterrandom ';'
2007-01-18 jproctertransfer and update of sequenceFeatures for associated...
2007-01-18 jprocterfixed last-residue bug and added sequence feature creat...
2007-01-18 jprocteradded resNum+insCode string field for truly unambiguous...
2007-01-18 amwaterhouseAdd the last sequence before annotations
2007-01-18 amwaterhouseTake scrollOffset into account
2007-01-18 amwaterhouseTool tip for annotation description
2007-01-18 amwaterhouseSet description on copy
2007-01-18 amwaterhouseSet tooltip
2007-01-18 amwaterhouse1.1 enabled
2007-01-18 amwaterhouseput vamsas bit back in
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[]
2007-01-18 amwaterhouseIs secondary structure label modified
2007-01-18 amwaterhouseDisplay description
2007-01-18 amwaterhouseDescriptions can be added to annotations
2007-01-17 amwaterhouseEdit name/description added to applet
2007-01-17 amwaterhouseFit to Window bug fixed
2007-01-17 jproctermade atom attributes public (rather than put in get...
2007-01-17 amwaterhouseDont set the font of alignFrameMenubarcvs update applet...
2007-01-04 amwaterhouseSend new sequences when firing alignment changed
2007-01-04 amwaterhouseReads in anything following seq id as a description
2007-01-04 amwaterhouseHEADER and ATOM must be position 0
2006-12-21 jproctertype change
2006-12-21 jprocterdescription from vamsas sequence and file type change
2006-12-21 amwaterhousecheck on sequence length
2006-12-21 amwaterhousegetSequenceAsString
2006-12-21 amwaterhousegetSequenceAsString
2006-12-21 amwaterhouseremove unnecessary import
2006-12-21 jproctertype change
2006-12-19 amwaterhouseorg.vamsas is now uk.ac.vamsas
2006-12-19 amwaterhousedescription may be null
2006-12-14 amwaterhouseset sequence_ref alignment
2006-12-14 amwaterhouseWatch out for - symbol lin jnet files
2006-12-14 amwaterhouseAre the labels all secondary Strutures? are the display...
2006-12-14 amwaterhouseone less cast
2006-12-11 jprocterfixed introduced bug (doh)
2006-12-11 jprocterclarified help documentation for annotation file format...
2006-12-11 amwaterhouseensure lastSeq is refreshed if new feature added
2006-12-07 amwaterhouseset labels null if not being used
2006-12-07 amwaterhousedont add char[] ref to a string
2006-12-06 jproctertype change
2006-12-06 jproctertypo fix.
2006-12-06 jproctergeneral pairwise substitution score models for pairwise...
2006-12-06 amwaterhouseprotected ok
2006-12-06 amwaterhouseChange text of ok if viewport not null
2006-12-06 amwaterhousetextfield has focus
2006-12-05 amwaterhouseSet startRes 0 for switch to wrap view
2006-12-05 amwaterhousesequence is char []
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