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jalview.git
2024-07-04
Jim Procter
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-07-04
Renia Correya
JAL-4392 Updated the colouring of consensus logo
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2024-07-03
Renia Correya
JAL-4392 Code refactoring
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2024-07-03
Renia Correya
JAL-4436 Code refactoring
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2024-07-03
Renia Correya
JAL-4392 Code Refactoring
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2024-07-03
Renia Correya
JAL-4436 Implementation of add colour by secondary...
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2024-06-28
Jim Procter
JAL-4386 annotate internal nodes either side of partiti...
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2024-06-28
Jim Procter
JAL-4386 move provider label into a new attribute on...
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2024-06-27
Jim Procter
JAL-4386 account for null entries in sequence array...
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2024-06-27
Jim Procter
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-06-27
Jim Procter
JAL-4386 allow score models to generate additional...
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2024-06-27
Jim Procter
JAL-4386 JAL-4411 factored out the test for a particula...
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2024-06-27
Jim Procter
JAL-4411 catch cases when 'ssStructFilePathNameInPDB...
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2024-06-27
Jim Procter
JAL-4411 handle Boolean from String when Jalview projec...
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2024-06-27
Renia Correya
JAL-4411 Fixed some test cases
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2024-06-27
Renia Correya
JAL-4411 Record source metadata in derived/transferred...
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2024-06-18
Renia Correya
JAl-4392 Hide secondary structure consensus with no...
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2024-06-12
Renia Correya
JAL-4392 Fixed failed test cases
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2024-06-12
Renia Correya
JAL-4392 Feature implementation of group consensus...
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2024-06-12
Renia Correya
JAL-4426 Fix when multiple secondary structure annotati...
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2024-06-07
Renia Correya
JAL-4426 Defect fix to display number of sequences...
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2024-06-06
Renia Correya
JAL-4426 Reword tool tip and status bar text
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2024-06-06
Renia Correya
JAL 4392 Reformat Secondary structure description text
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2024-06-06
Renia Correya
JAL-4426 Add feature to show number of sequences
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2024-06-05
Renia Correya
JAL-4392 Bug fixing and code refactoring.
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2024-05-28
Renia Correya
JAL-4386 Fixed some identified bugs in recent changes
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2024-05-28
Renia Correya
Merge remote-tracking branch 'origin/feature/JAL-4386_c...
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2024-05-28
Renia Correya
JAL-4386 Added secondary structure providers check...
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2024-05-16
Jim Procter
Merge branch 'develop' into feature/JAL-4386_calculate_...
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2024-05-16
Jim Procter
JAL-4356 bump release date to today, release notes...
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2024-05-15
Renia Correya
JAL-4386 Fixed failed test case
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2024-05-15
Jim Procter
Merge branch 'bug/JAL-4416_sview_not_shown_for_local_st...
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2024-05-15
Renia Correya
JAL-4386 Fixed failed test cases
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2024-05-15
Jim Procter
JAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a...
bug/JAL-4416_sview_not_shown_for_local_strucfile
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2024-05-15
Jim Procter
JAL-4416 ensure the structure view is shown and any...
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2024-05-15
Jim Procter
JAL-4416 make sure the structure viewer is actually...
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2024-05-15
Renia Correya
JAL-4386 Added preferences for secondary structure...
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2024-05-15
Jim Procter
Merge branch 'bug/JAL-4407_no_sec_str_from_draganddrop_...
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2024-05-15
Renia Correya
JAL-4386 - Implementation of retrieving secondary structure
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2024-05-14
Ben Soares
JAL-4217 Upped the main testTask0 timeout to 15 minutes...
improvement/JAL-4217_added_a_timeout_to_tests
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2024-05-14
Jim Procter
JAL-4356 fix release note
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2024-05-14
Jim Procter
JAL-4356 set release date to Weds 15th May and update...
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2024-05-13
Jim Procter
JAL-4356 JAL-518 JAL-4413 release notes
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2024-05-13
Jim Procter
Merge branch 'features/JAL-518_justify_seqs_in_region...
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2024-05-13
Jim Procter
JAL-518 better test coverage and support for case prese...
features/JAL-518_justify_seqs_in_region
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2024-05-13
Jim Procter
JAL-518 failing test for case preservation on justify
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2024-05-13
Renia Correya
Merge remote-tracking branch 'origin/develop' into...
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2024-05-13
Jim Procter
Merge branch 'develop' into features/JAL-518_justify_se...
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2024-05-13
Jim Procter
JAL-4413 timeouts Merge branch 'improvement/JAL-4217_ad...
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2024-05-13
Jim Procter
Merge branch 'develop' into features/JAL-518_justify_se...
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2024-05-13
Renia Correya
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-05-13
Renia Correya
JAL-4386 - Implementation of substitution matrix and...
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2024-05-10
Jim Procter
JAL-4411 fix typo :(
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2024-05-10
Jim Procter
JAL-4411 store class of provider in PDBEntry
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2024-05-02
Ben Soares
JAL-4217 Sensible timeout for testTask0
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2024-05-02
Ben Soares
JAL-4217 Added a timeout for testTasks. If timeout...
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2024-05-01
Renia Correya
Merge remote-tracking branch 'origin/bug/JAL-4407_no_se...
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2024-05-01
Jim Procter
JAL-4407 don't transfer 'local' settings - leave as...
bug/JAL-4407_no_sec_str_from_draganddrop_to_msa
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2024-05-01
Jim Procter
JAL-4407 failing test checking for secondary structure...
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2024-04-30
Renia Correya
JAL-4392 Merging consensus secondary structure
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2024-04-30
Renia Correya
JAL-4386 Comparing secondary structure similarity direc...
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2024-04-26
Renia Correya
JAL-4386 Drop down for secondary structure sources...
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2024-04-24
Renia Correya
JAL-4386 PCA/Tree Calculation for Secondary Structures...
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2024-04-16
Renia Correya
JAL-4386 Calculate tree using secondary structure annot...
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2024-03-13
Renia Correya
JAL-4386_Added changes in similarity score calculation...
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2024-03-08
Renia Correya
JAL-4386 Corrected failed test case.
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2024-03-08
Renia Correya
JAL-4386 Added further checks for sequences that have...
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2024-03-08
Renia Correya
JAL-4386 Calculate tree using secondary structure annot...
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2024-01-23
James Procter
JAL-4356 release notes
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2024-01-23
James Procter
JAL-4356 update release notes for 2.11.3.3
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2024-01-23
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2024-01-23
James Procter
Merge branch 'develop' into bug/JAL-4290_headless_align...
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2024-01-23
Ben Soares
JAL-4367 Limit right and top adjustments
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2024-01-23
Ben Soares
JAL-4290 Fix image comparison between gui and headless...
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2024-01-23
Ben Soares
JAL-4290 fixed tests
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2024-01-23
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2024-01-23
James Procter
JAL-4353 wait for files to be written fully before...
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2024-01-23
James Procter
JAL-4353 singleThread all tests
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2024-01-23
James Procter
JAL-4369 invokeAndWait to avoid hang whilst calling...
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2024-01-23
James Procter
JAL-4369 uniprotkb - try to avoid another redirect...
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2024-01-23
James Procter
JAL-4369 use rest.uniprot.org as fetch domain
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2024-01-23
James Procter
Merge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4368_default_colourscheme_applied...
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2024-01-19
Ben Soares
JAL-4373 Setting the jvmmempc and jvmmemmax strings...
bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch
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2024-01-19
Ben Soares
JAL-4373 Fix Main-Class and other attribute settings...
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2024-01-05
Ben Soares
JAL-4368 Only set a colour scheme if --colour is given...
bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately
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2023-12-19
Ben Soares
JAL-4290 Fixed one test
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2023-12-18
Ben Soares
JAL-4290 not quite working tests
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2023-12-18
Ben Soares
JAL-4290 incorrect usage of main()
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2023-12-15
Ben Soares
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2023-12-15
Ben Soares
JAL-4290 Add method to allow for specific settings...
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2023-12-15
Ben Soares
JAL-4290 Set structureSelectionManager settings more...
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2023-12-15
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_figure_wi...
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2023-12-15
James Procter
JAL-4290 new CommandsTest.headlessOrGuiImageOutputTest...
bug/JAL-4290_headless_alignment_figure_with_sse
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2023-12-15
Ben Soares
JAL-4290 Move some annotation visibility settings to...
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2023-12-14
James Procter
JAL-4356 update release notes
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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