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jalview.git
2024-03-15 Ben SoaresJAL-3225 Force gradle version in eclipse settings commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'develop' into bug/JAL-4290_headless_align... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4367 Limit right and top adjustments commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4290 Fix image comparison between gui and headless... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresJAL-4290 fixed tests commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4353 singleThread all tests commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'bug/JAL-4235_gradle_task_jalviewjsTranspi... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4235_gradle_task_ja... commit | commitdiff | tree | snapshot
2024-01-23 Ben SoaresMerge branch 'develop' into bug/JAL-4235_gradle_task_ja... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 invokeAndWait to avoid hang whilst calling... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 uniprotkb - try to avoid another redirect... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterJAL-4369 use rest.uniprot.org as fetch domain commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor... commit | commitdiff | tree | snapshot
2024-01-23 James ProcterMerge branch 'bug/JAL-4368_default_colourscheme_applied... commit | commitdiff | tree | snapshot
2024-01-19 Ben SoaresJAL-4373 Setting the jvmmempc and jvmmemmax strings... bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch commit | commitdiff | tree | snapshot
2024-01-19 Ben SoaresJAL-4373 Fix Main-Class and other attribute settings... commit | commitdiff | tree | snapshot
2024-01-05 Ben SoaresJAL-4368 Only set a colour scheme if --colour is given... bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately commit | commitdiff | tree | snapshot
2024-01-05 Ben SoaresJAL-4328 Example html 'form' launch in examples.html commit | commitdiff | tree | snapshot
2023-12-20 Ben SoaresJAL-4238 Marked where JalviewJS is hanging on 3DBeacons... commit | commitdiff | tree | snapshot
2023-12-20 Ben SoaresJAL-4059 Added some more Platform.addJ2SDirectDatabaseC... commit | commitdiff | tree | snapshot
2023-12-20 Ben SoaresJAL-4328 Move the examples links to a sensible place... commit | commitdiff | tree | snapshot
2023-12-19 Ben SoaresJAL-4290 Fixed one test commit | commitdiff | tree | snapshot
2023-12-18 Ben SoaresJAL-4290 not quite working tests commit | commitdiff | tree | snapshot
2023-12-18 Ben SoaresJAL-4290 incorrect usage of main() commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresMerge branch 'bug/JAL-4290_headless_alignment_export_wi... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Add method to allow for specific settings... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Set structureSelectionManager settings more... commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4059 Only run this once commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4059 Use namespaced query parameters in preference... commit | commitdiff | tree | snapshot
2023-12-15 James ProcterMerge branch 'bug/JAL-4290_headless_alignment_figure_wi... commit | commitdiff | tree | snapshot
2023-12-15 James ProcterJAL-4290 new CommandsTest.headlessOrGuiImageOutputTest... bug/JAL-4290_headless_alignment_figure_with_sse commit | commitdiff | tree | snapshot
2023-12-15 Ben SoaresJAL-4290 Move some annotation visibility settings to... commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4356 update release notes commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4217 singleThread all tests commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresJAL-4059 Improvement to launch indicator commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresJAL-4059 Updated swingjs and removed spare library... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 bigger tighter test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 failing test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files... commit | commitdiff | tree | snapshot
2023-12-11 James ProcterJAL-4192 more specific info about versions needed commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 re-used random color code commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 bump RELEASE commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... commit | commitdiff | tree | snapshot
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA... commit | commitdiff | tree | snapshot
2023-12-04 Ben SoaresJAL-4059 Attempts to set JalviewJS desktop geometry... commit | commitdiff | tree | snapshot
2023-12-04 Ben SoaresJAL-4059 rename files from jsmol j2s zip from jsmol... commit | commitdiff | tree | snapshot
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version... commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4351 update release notes for JAL-4342 commit | commitdiff | tree | snapshot
2023-11-30 James ProcterMerge branch 'patch/JAL-4342_emptyannotationsexport... commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport commit | commitdiff | tree | snapshot
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4351 2.11.3.2 scheduled for 1st December release commit | commitdiff | tree | snapshot
2023-11-30 James ProcterMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... commit | commitdiff | tree | snapshot
2023-11-30 Ben SoaresMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... commit | commitdiff | tree | snapshot
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... commit | commitdiff | tree | snapshot
2023-11-29 Ben SoaresJAL-4059 Fixed a test for adding jalview.bin.JalviewJS bug/JAL-4344_structureimage_cl_arg_only_creating_background_colour_square commit | commitdiff | tree | snapshot
2023-11-29 Ben SoaresMerge branch 'bug/JAL-4238_PAEs_not_being_shown_in_Jalv... commit | commitdiff | tree | snapshot
2023-11-29 Ben SoaresJAL-4344 Some fixes of waiting blocks, and headless... commit | commitdiff | tree | snapshot
2023-11-27 Ben SoaresJAL-4238 minor errors fixed for JalviewJS structure... commit | commitdiff | tree | snapshot
2023-11-24 Ben SoaresJAL-4059 Allow form-created querystring style values... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresJAL-4059 Storing important thisApplet information in... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresJAL-4059 Made jalview.bin.JalviewJS to use new command... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresJAL-4059 rename vars to j2s_ this and that for clarity commit | commitdiff | tree | snapshot
2023-11-22 Ben SoaresJAL-4059 Send bespoke Info hash parameters into jalview... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterJAL-4343 fix insufficient-caffeine error - add whats... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterJAL-4343 release today, update notes for JAL-4348 and... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterMerge branch 'patch/JAL-4345_pae_epas1_doubleclick... commit | commitdiff | tree | snapshot
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 an attempt to set JalviewJS desktop overflow... commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 Changing visibility of locateInRange(int)... commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 example file added to exmaples commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 test files for PAE in jalviewjs commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4059 updated swingjs, Jmol-SwingJS.zip. Insignifica... commit | commitdiff | tree | snapshot
2023-11-20 Ben SoaresJAL-4348 Add newer versions of Chimera and ChimeraX... commit | commitdiff | tree | snapshot
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature... commit | commitdiff | tree | snapshot
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