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jalview.git
2010-09-03
jprocter
parameter set serialization/deserialization and preset...
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2010-09-02
jprocter
fix occasional arrayIndexOutOfBounds when sequences...
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2010-09-02
jprocter
debugged option changed logic and layout
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2010-09-02
jprocter
update gui in gui thread - not structure loading thread
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2010-09-02
jprocter
increment if strings *dont* match
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2010-09-02
jprocter
1.1 compatibility
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2010-09-02
jprocter
re-implemented user prefs logic - still need to debug...
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2010-08-31
jprocter
notes re JAL-623 and JAL-583, new api methods for addin...
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2010-08-31
jprocter
notes re JAL-629
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2010-08-31
jprocter
fixed various null pointer exceptions that occur when...
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2010-08-31
jprocter
fixed various null pointer exceptions that occur when...
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2010-08-31
jprocter
added URL display for parameters/options and debugged...
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2010-08-31
jprocter
utilities for cloning and manipulating JabaWS parameter...
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2010-08-27
jprocter
refactored seq/str binding methods and ensured that...
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2010-08-27
jprocter
patch for structures with multiple models, and refactor...
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2010-08-27
jprocter
1.2 compatibility
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2010-08-27
jprocter
revised sequence/structure binding so one structure...
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2010-08-27
jprocter
revised sequence/structure binding so one structure...
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2010-08-27
jprocter
patch re issues.jalview.org/browse/JAL-583 : hack to...
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2010-08-25
jprocter
update to Jmol 12.1.5 (will become 12.2.X when released)
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2010-08-25
jprocter
applet now requires java 1.5 minimum (jmol 12.1.xx...
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2010-08-25
jprocter
update to Jmol 12.1.5 (will become 12.2.X when released)
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2010-08-25
jprocter
init Jmol with 'SmarterJmolAdapter'
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2010-08-25
jprocter
correct initing of JmolViewer to avoid security excepti...
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2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
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2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
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2010-08-23
jprocter
ensure template InstallAnywhere build file is always...
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2010-08-20
jprocter
avoid race condition by setting sequence logo flag...
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2010-08-20
jprocter
rollback to 1.58 - since excludes are unnecessary
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2010-08-20
jprocter
broken xml ? (could be old ant issue)
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2010-08-20
jprocter
complete the sequence-structure mapping details. *...
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2010-08-20
jprocter
refactor jmol api so it doesn't clash with Swing compon...
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2010-08-20
jprocter
check that we have mappings before trying to broadcast...
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2010-08-20
jprocter
(probably unnecessary) explicit inclusion of jalview...
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2010-08-20
jprocter
refactored external structure viewer binding API calls...
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2010-08-20
jprocter
wrapped code from URL retrieval tester as a function...
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2010-08-20
jprocter
improved debug output when Jmol viewer creation fails
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2010-08-20
jprocter
extend jmol binding handles selection events and add...
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2010-08-20
jprocter
binding between JalviewLite alignment windows and some...
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2010-08-18
jprocter
JAL-617 - new menu items for exporting current view...
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2010-08-18
jprocter
output the eigenvector matrix in full: JAL-616
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2010-08-18
jprocter
JAL-612 - catch hidden OOM related to filling in cut...
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2010-08-18
jprocter
new appletlib path for jars specific to the applet
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2010-08-18
jprocter
new appletlib path for jars specific to the applet
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2010-08-18
jprocter
source level now 1.5
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2010-08-18
jprocter
source level now 1.5
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2010-08-18
jprocter
source level now 1.5
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2010-08-18
jprocter
new appletlib path for jars specific to the applet
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2010-08-18
jprocter
update Jmol to 12.0.6
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2010-08-18
jprocter
1.5 annotation removal
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2010-08-18
jprocter
update jmol instance
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2010-08-18
jprocter
thread safe construction of Jmol instance and hack...
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2010-08-18
jprocter
refactor to abstract jmol/jalview binding and applet...
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2010-08-18
jprocter
code design comment
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2010-08-18
jprocter
1.5 annotation fix and thread safe menu update
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2010-08-18
jprocter
refactor to jalview.api methods
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2010-08-18
jprocter
1.5 annotation fix
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2010-08-18
jprocter
colour menu items are in same radiobutton group
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2010-08-18
jprocter
cutn'paste fix so rna residue chains are assembled...
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2010-08-13
jprocter
improved parameter set store/save/rename logic and...
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2010-08-11
jprocter
jaba ws client revision 2680
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2010-08-11
jprocter
reverted dodgy test code
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2010-08-11
jprocter
improved dialog layout and flow and fixed switching...
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2010-08-11
jprocter
ask user if they want to run the JabaWS tester on new...
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2010-08-06
jprocter
render jnlp artefacts for 1G and 2G machines (jalview_1...
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2010-08-06
jprocter
interactive/batch mode test for groovy scripting (See...
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2010-08-04
jprocter
ensure that both null and undefined colourscheme names...
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2010-08-04
jprocter
reorganised colourscheme enumeration to make it easier...
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2010-08-02
jprocter
jabaws is the new jaba!
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2010-07-21
jprocter
jaba!=jws2
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2010-07-21
jprocter
URLs that begin with javascript: are opened in the...
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2010-07-20
jprocter
less ambiguous feature style description
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2010-07-20
jprocter
removed 'method notes' comment in job output.
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2010-07-20
jprocter
update to Jaba_r1 minimal client distribution, and...
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2010-07-11
jprocter
wrong config string
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2010-07-11
jprocter
jaba on classpath
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2010-07-11
jprocter
no tooltip and cleaner parameter layout
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2010-07-11
jprocter
divide services by host within the menu
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2010-07-11
jprocter
jaba is the new name.
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2010-07-01
jprocter
default public service URL
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2010-06-29
jprocter
jmol 12 patch - ensure we replace the correct filename...
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2010-06-29
jprocter
upgrading structure/sequence binding so that a structur...
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2010-06-29
jprocter
new ajax api methods for linking existing jmol viewers...
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2010-06-29
jprocter
interfaces implemented by jalview renderers
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2010-06-29
jprocter
proxy interface for structure viewers that jalview...
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2010-06-29
jprocter
new abstract proxy for use by applet and application
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2010-06-29
jprocter
upgrade to InstallAnywhere 2010 and ensure minimum...
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2010-06-29
jprocter
patch for npe that occurs for importing Jalview project...
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2010-06-29
jprocter
typo bugfix
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2010-06-29
jprocter
catch OOM earlier * JAL-595
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2010-06-28
jprocter
drop down selection of different parameter sets
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2010-06-27
jprocter
edit jws2 job parameters before running job
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2010-06-22
jprocter
prototype - implementation in progress JAL-591
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2010-06-21
jprocter
set program name to service type (see related issues...
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2010-06-21
jprocter
organisation by host and service type
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2010-06-21
jprocter
generic action text method
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2010-06-21
jprocter
ensure service menu is rebuilt after update listeners...
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2010-06-19
jprocter
2.6 docs
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2010-06-19
jprocter
new web services preference tab (JAL-589)
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2010-06-19
jprocter
rejigged change support to make it (more) reliable
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