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jalview.git
2018-08-01
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-08-01
Jim Procter
Merge branch 'task/JAL-3047_clover2104b1_cherrypick...
releases/Release_2_10_4_Branch
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2018-08-01
Jim Procter
JAL-3047 don't set classes unconditionally (forgot...
task/JAL-3047_clover2104b1_cherrypick
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2018-08-01
Jim Procter
JAL-3047 don’t let the makedist task complete if a...
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2018-08-01
Jim Procter
JAL-3047 ‘cloverclasses’ build directory for instrument...
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2018-08-01
Jim Procter
JAL-3047 enable clover for testng
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2018-08-01
Jim Procter
JAL-3047 ignore clover output dir
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2018-07-31
bsoares
Stockholm file for test
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2018-07-30
bsoares
Fixed bug ignoring "alpha" extended braces in RNA SS...
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2018-06-07
Jim Procter
JAL-3009 release notes
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2018-06-07
Jim Procter
Merge branch 'bugs/JAL-3009_blockingNetworkThreads...
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2018-06-07
Jim Procter
JAL-2999 what's new and tweak release notes order
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2018-06-07
gmungoc
JAL-2920 format/comment tidy
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2018-06-07
gmungoc
JAL-2920 wrap description in <html/> if it includes...
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2018-06-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06
gmungoc
JAL-2920 unit tests for 3 or more original or variant...
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2018-06-06
Jim Procter
JAL-2999 refine release notes
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2018-06-06
Jim Procter
JAL-2999 release 2.10.4b1 on Thursday (promise!)
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2018-06-06
Jim Procter
JAL-2920 release notes
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2018-06-06
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
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2018-06-06
Jim Procter
JAL-2920 revised TODO for JAL-3025
bug/JAL-2920_uniprotvariantfeature
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2018-06-06
Jim Procter
JAL-2920 don’t output variant/original sequence as...
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2018-06-06
Jim Procter
JAL-2920 JAL-3017 uniprot XML schema included in mappin...
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2018-06-06
Jim Procter
JAL-1920 JAL-3017 use newline not <br/> in description...
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2018-06-05
Jim Procter
JAL-3009 news reader thread should be in background...
bugs/JAL-3009_blockingNetworkThreads
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2018-06-05
Jim Procter
JAL-3009 Identifiers.Org retrieval on background thread.
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2018-06-04
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
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2018-06-04
Jim Procter
JAL-2999 update release notes and patch date to 5th...
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2018-06-02
Jim Procter
JAL-3017 parse multiple variant elements for uniprot...
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2018-05-30
Jim Procter
JAL-2999 2.10.4b1 release 31st May
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2018-05-26
Jim Procter
JAL-2999 release date for 2.10.4b1 set for 27th May...
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2018-05-25
Jim Procter
Merge branch 'documentation/JAL-2999_r2104b1' into...
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2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
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2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
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2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
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2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
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2018-05-25
Jim Procter
Merge branch 'feature/JAL-2994chimeraPath' into release...
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2018-05-25
Jim Procter
JAL-1460 clarify release notes - and mention that short...
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2018-05-25
Jim Procter
JAL-2994 add a few future release points for good measu...
feature/JAL-2994chimeraPath
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2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
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2018-05-25
Jim Procter
JAL-1460 javadoc
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2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
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2018-05-25
gmungoc
JAL-2994 temporary patch with paths to Chimera for...
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2018-05-24
Jim Procter
JAL-2999 issues resolved (or nearly so) for 2.10.4b1
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2018-05-24
gmungoc
JAL-2997 additional tests
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2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
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2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
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2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
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2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
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2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23
gmungoc
JAL-2997 unit test
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2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
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2018-05-23
gmungoc
JAL-2997 handle tab-delimited trailing column number...
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2018-05-23
Jim Procter
JAL-2999 release notes and version bump for jalview...
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2018-05-23
Jim Procter
JAL-2895 replace $$Jalview-Version$$ in help.jhm with...
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2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
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2018-05-10
Jim Procter
JAL-2920 release notes
Release_2_10_4
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2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
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2018-05-10
Jim Procter
JAL-2920 basic test for Description from features with...
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2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
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2018-05-09
Jim Procter
JAL-2906 update release date and release notes
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2018-05-09
Jim Procter
JAL-2931 patch IA paths for new build box
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2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-09
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
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2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
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2018-05-08
Jim Procter
JAL-2321 release notes
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2018-05-08
Jim Procter
Merge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile...
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2018-05-07
Jim Procter
JAL-2321 patch test to ensure structures are actually...
patch/JAL-2321_addsecstrForDroppedPDBFile
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2018-05-07
Jim Procter
JAL-2321 ensure default is ‘parseImmediately=true’
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2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
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2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
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2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
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2018-05-07
Jim Procter
JAL-2321 isParseImmediately() allows the parse() method...
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2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
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2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
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2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
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2018-05-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' of source...
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2018-05-04
gmungoc
JAL-2906 small tweaks to release notes
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2018-05-04
Jim Procter
JAL-2906 2.10.4 release for 8th May 2018
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2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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2018-05-04
Jim Procter
JAL-2906 removed mention of experimental features,...
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2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
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2018-05-04
Jim Procter
JAL-2929 JAL-2922 release notes
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2018-05-04
Jim Procter
JAL-2976 typo in installAnywhere build for VAqua dependency
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2018-05-04
Jim Procter
JAL-2960 release notes
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2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
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2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
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2018-05-04
Jim Procter
JAL-2976 Vaqua fallback release notes JAL-2906
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2018-05-04
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
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2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
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2018-05-02
Jim Procter
JAL-2976 Vaqua(4) as a dependency
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2018-05-01
Jim Procter
JAL-2899 release notes
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2018-05-01
Jim Procter
JAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)
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2018-05-01
Jim Procter
JAL-2925 release notes
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2018-05-01
Jim Procter
JAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for...
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2018-05-01
Jim Procter
JAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...
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2018-05-01
Jim Procter
JAL-2906 reformat release notes
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2018-05-01
Jim Procter
JAL-2906 typo
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2018-05-01
Jim Procter
JAL-2944 revised docs and structure chooser screen...
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2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
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