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jalview.git
2023-12-15 Ben SoaresJAL-4059 Use namespaced query parameters in preference... commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4356 update release notes commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4353 wait for files to be written fully before... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterJAL-4217 singleThread all tests commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-14 James ProcterMerge branch 'develop' into bug/JAL-2934proportionalScr... bug/JAL-2934proportionalScrolling commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresJAL-4059 Improvement to launch indicator commit | commitdiff | tree | snapshot
2023-12-14 Ben SoaresJAL-4059 Updated swingjs and removed spare library... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 bigger tighter test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 don’t try and export an image when Jmol is... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'develop' into bug/JAL-4353_cannot_output_... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4217 close internal frame on the swing thread to... commit | commitdiff | tree | snapshot
2023-12-12 Ben SoaresJAL-4353 helper method and test for primary/secondary... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterMerge branch 'bug/JAL-4353_cannot_output_multiple_diffe... commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 failing test commit | commitdiff | tree | snapshot
2023-12-12 James ProcterJAL-4353 fix assert that successive test output files... commit | commitdiff | tree | snapshot
2023-12-11 James ProcterJAL-4192 more specific info about versions needed commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 re-used random color code commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Preserve the user given 'linkedId' with ArgVal... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 bump RELEASE commit | commitdiff | tree | snapshot
2023-12-06 James ProcterJAL-4356 new release notes and whats new for 2.11.3... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'patch/JAL-840_clustalx_docs_fix' into... commit | commitdiff | tree | snapshot
2023-12-06 James ProcterMerge branch 'bug/JAL-2934proportionalScrolling' into... commit | commitdiff | tree | snapshot
2023-12-06 Ben SoaresJAL-4353 Add a 'random' colour to produce a random... commit | commitdiff | tree | snapshot
2023-12-05 Ben SoaresJAL-4353 Add secondary Types for Args, for STRUCTUREIMA... commit | commitdiff | tree | snapshot
2023-12-04 Ben SoaresJAL-4059 Attempts to set JalviewJS desktop geometry... commit | commitdiff | tree | snapshot
2023-12-04 Ben SoaresJAL-4059 rename files from jsmol j2s zip from jsmol... commit | commitdiff | tree | snapshot
2023-12-01 Ben SoaresJAL-4243 Updated bio.tools record and JSON (version... commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4351 update release notes for JAL-4342 commit | commitdiff | tree | snapshot
2023-11-30 James ProcterMerge branch 'patch/JAL-4342_emptyannotationsexport... commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4342 test and patch checking annotation csv export... patch/JAL-4342_emptyannotationsexport commit | commitdiff | tree | snapshot
2023-11-30 James ProcterPatch fixes JAL-4165 - added to release notes JAL-4351 commit | commitdiff | tree | snapshot
2023-11-30 James ProcterJAL-4351 2.11.3.2 scheduled for 1st December release commit | commitdiff | tree | snapshot
2023-11-30 James ProcterMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... commit | commitdiff | tree | snapshot
2023-11-30 Ben SoaresMerge branch 'bug/JAL-4344_structureimage_cl_arg_only_c... commit | commitdiff | tree | snapshot
2023-11-30 Ben SoaresJAL-4344 careful application of -Djava.awt.headless... commit | commitdiff | tree | snapshot
2023-11-29 Ben SoaresJAL-4059 Fixed a test for adding jalview.bin.JalviewJS bug/JAL-4344_structureimage_cl_arg_only_creating_background_colour_square commit | commitdiff | tree | snapshot
2023-11-29 Ben SoaresMerge branch 'bug/JAL-4238_PAEs_not_being_shown_in_Jalv... commit | commitdiff | tree | snapshot
2023-11-29 Ben SoaresJAL-4344 Some fixes of waiting blocks, and headless... commit | commitdiff | tree | snapshot
2023-11-27 Ben SoaresJAL-4238 minor errors fixed for JalviewJS structure... commit | commitdiff | tree | snapshot
2023-11-24 Ben SoaresJAL-4059 Allow form-created querystring style values... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresJAL-4059 Storing important thisApplet information in... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresJAL-4059 Made jalview.bin.JalviewJS to use new command... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-11-23 Ben SoaresJAL-4059 rename vars to j2s_ this and that for clarity commit | commitdiff | tree | snapshot
2023-11-22 Ben SoaresJAL-4059 Send bespoke Info hash parameters into jalview... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterJAL-4343 fix insufficient-caffeine error - add whats... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterJAL-4343 release today, update notes for JAL-4348 and... commit | commitdiff | tree | snapshot
2023-11-22 James ProcterMerge branch 'patch/JAL-4345_pae_epas1_doubleclick... commit | commitdiff | tree | snapshot
2023-11-21 James ProcterJAL-4345 patch and release notes patch/JAL-4345_pae_epas1_doubleclick commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 an attempt to set JalviewJS desktop overflow... commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 Changing visibility of locateInRange(int)... commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 example file added to exmaples commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4238 test files for PAE in jalviewjs commit | commitdiff | tree | snapshot
2023-11-21 Ben SoaresJAL-4059 updated swingjs, Jmol-SwingJS.zip. Insignifica... commit | commitdiff | tree | snapshot
2023-11-20 Ben SoaresJAL-4348 Add newer versions of Chimera and ChimeraX... commit | commitdiff | tree | snapshot
2023-11-20 James ProcterJAL-4343 patch for JAL-4347 uniprot non-pos feature... commit | commitdiff | tree | snapshot
2023-11-17 James ProcterJAL-4343 release notes for JAL-4340 and JAL-4243 commit | commitdiff | tree | snapshot
2023-11-17 James ProcterJAL-4343 bump version commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresJAL-4243 Updated bio.tools record for 2.11.3.0 commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresJAL-4340 Change launch scripts to be xresources to... commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresJAL-4238 ignore thread.sleeps in jalviewjs. Added a... commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresMerge branch 'bug/JAL-4059_update_swingJS_for_JalviewJS... commit | commitdiff | tree | snapshot
2023-11-16 Ben SoaresJAL-4059 Revert libjs/MiGLayout as new miglayout transp... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 JAL-4334 patch in release notes commit | commitdiff | tree | snapshot
2023-11-15 James ProcterMerge branch 'bug/JAL-4334_unknownstartenduniprotfeatur... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterMerge branch 'patch/JAL-4222_100s_timeout_on_imagexport... commit | commitdiff | tree | snapshot
2023-11-15 Ben SoaresMerge branch 'develop' into bug/JAL-4238_PAEs_not_being... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4273 actually pass startSeq etc on to rendering... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 fix up release notes new known issues commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4222 bail if we wait too long for Jmol to save... patch/JAL-4222_100s_timeout_on_imagexport commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 blocker patch JAL-3772 tidy up groovy console... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 JAL-4334 position status when start, end or... bug/JAL-4334_unknownstartenduniprotfeatures commit | commitdiff | tree | snapshot
2023-11-15 Ben SoaresJAL-3836 Allow .ext.gz files to be recognised in the... commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 JAL-4338 known defect commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 release 15th November 2023 commit | commitdiff | tree | snapshot
2023-11-15 James ProcterJAL-4090 JAL-3858 fix up PAE docs - drop the EBI image... commit | commitdiff | tree | snapshot
2023-11-15 Ben SoaresMerge branch 'bug/JAL-4059_update_swingJS_for_JalviewJS... commit | commitdiff | tree | snapshot
2023-11-15 Ben SoaresJAL-4059 update intervalstore-1.2-site.zip transpiled... commit | commitdiff | tree | snapshot
2023-11-15 Ben SoaresMerge branch 'feature/JAL-3576intervalStore_1_2' into... commit | commitdiff | tree | snapshot
2023-11-14 Ben SoaresJAL-4238 examples files for PAE commit | commitdiff | tree | snapshot
2023-11-14 Ben SoaresJAL-4059 added test for <br/> break commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresMerge branch 'bug/JAL-4059_update_swingJS_for_JalviewJS... commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresJAL-4059 fix other PopupMenuTest commit | commitdiff | tree | snapshot
2023-11-13 James ProcterMerge branch 'develop' into bug/JAL-4059_update_swingJS... commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresJAL-4059 revert to intervalstore 1.1 for VCFLoader commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresJAL-4059 fixed a test that is now working as expected... commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresJAL-4059 Fix the tooltip formatting for when, e.g.... commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresJAL-4059 redo these tests as TestNG asserts to add... commit | commitdiff | tree | snapshot
2023-11-13 James ProcterJAL-4090 JAL-1551 source license commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresMerge branch 'develop' into bug/JAL-4059_update_swingJS... commit | commitdiff | tree | snapshot
2023-11-13 Ben SoaresJAL-4059 Updates to miglayout, varna, intervalstore... commit | commitdiff | tree | snapshot
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