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jalview.git
2018-02-26 gmungocJAL-2907 read/write underscore for annotation at gap... commit | commitdiff | tree | snapshot
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... commit | commitdiff | tree | snapshot
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-02-20 Jim ProcterMerge branch 'bugs/JAL-2780_JAL-2781_pdbnegativenums... commit | commitdiff | tree | snapshot
2018-02-15 Jim ProcterMerge branch 'develop' into releases/Release_2_10_4_Branch commit | commitdiff | tree | snapshot
2018-02-15 Jim ProcterJAL-2906 bump release version and cut new release note... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 scan all test IDs before testing and reporting... bugs/JAL-2780_JAL-2781_pdbnegativenums commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 SequenceI.findFeatures takes column numbers... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 JAL-2781 don’t create a mapping if sequence... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2780 JAL-2781 only create a mapping entry or write... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 JAL-2780 include sequence start number when... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 ensure Trim is disabled before test starts commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 refactor ‘trim retrieved sequence’ preference... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 null local siftsClient variable if exception... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 refactor StructureSelectionManager.siftsClient... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 FIXME: value of sourceType parameter always... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 refactor possibly non-functional ‘extract... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 tidy up comments on getMapping/computeMapping commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2781 report exactly which residues do not receive... commit | commitdiff | tree | snapshot
2018-02-13 Jim ProcterJAL-2905 added additional jvmarg for testng task condit... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2780 JAL-2781 extra column in mapping array commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2780 JAL-2781 ahem - add a semicolon if there isn... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2780 use value of ’UNASSIGNED’ constant in assert... commit | commitdiff | tree | snapshot
2018-02-12 Jim ProcterJAL-2904 replaced assert for (getEnd()-getStart()+1... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2781 use SIFTs mapping rather than maxChain AlignSe... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2780 JAL-2781 use PDBe numbering to map between... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2781 mark aligned positions via StructureMapping... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2780 JAL-2781 include a Mapping object in Structure... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2780 JAL-2781 UNASSIGNED positions marked as Intege... commit | commitdiff | tree | snapshot
2018-02-11 Jim ProcterJAL-2781 fix test data for full length annotation commit | commitdiff | tree | snapshot
2018-02-09 Jim ProcterUse the “PDBe” or “PDB” numbering (starts from 1, corre... commit | commitdiff | tree | snapshot
2018-02-09 Jim ProcterJAL-2780 JAL-2781 should always ensure SIFTS mappings... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 run sequentially and ensure windows... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2891 clear all windows always beforeTest... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2902 thread off dialog close op to avoid deadlock... commit | commitdiff | tree | snapshot
2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 first pass at failing test for incorr... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactored helper method... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 fix javadoc in line with behaviour... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 JAL-2902 refactor ‘OK’ action to... commit | commitdiff | tree | snapshot
2018-02-07 Jim ProcterJAL-2780 JAL-2781 don’t assume contiguous mapping to... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 (failing) test comparing location... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 programmatically select structures... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2871 only look up current table view once commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 test AlignmentI.findAnnotations locat... commit | commitdiff | tree | snapshot
2018-02-05 Jim ProcterJAL-2780 JAL-2781 - patch and first test for AlignmentI... commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge commit | commitdiff | tree | snapshot
2018-02-05 gmungocJAL-2897 more informative description on synonymous... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 merged to spikes-mungo commit | commitdiff | tree | snapshot
2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into featur... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotatio... commit | commitdiff | tree | snapshot
2018-02-02 gmungocJAL-984 better behaved panel height adjuster commit | commitdiff | tree | snapshot
2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2069 menu item now "Variable colour..." to hint... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... commit | commitdiff | tree | snapshot
2018-01-30 gmungocJAL-2897 formatting change only prior to functional... commit | commitdiff | tree | snapshot
2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressio... commit | commitdiff | tree | snapshot
2018-01-26 Jim ProcterMerge branch 'releases/Release_2_10_3_Branch' into... commit | commitdiff | tree | snapshot
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch releases/Release_2_10_3_Branch Release_2_10_3b1 commit | commitdiff | tree | snapshot
2018-01-24 Jim ProcterJAL-2858 update release date and rejig what's new message commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 fix what's new commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update latest release notes link in TOC commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2859 release notes commit | commitdiff | tree | snapshot
2018-01-23 Jim ProcterJAL-2858 update release notes commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 release notes for 2.10.3b1 (including revision... commit | commitdiff | tree | snapshot
2018-01-22 Jim ProcterJAL-2858 bump version number for 2.10.3b1 commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2810 JAL-2886 i18n commit | commitdiff | tree | snapshot
2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved... commit | commitdiff | tree | snapshot
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2018-01-11 kiramtJAL-2662 Updated README task/JAL-2662 commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-1793 update spike branch to latest commit | commitdiff | tree | snapshot
2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor() commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters... commit | commitdiff | tree | snapshot
2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc commit | commitdiff | tree | snapshot
2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold commit | commitdiff | tree | snapshot
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 missed Castor class commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview... commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 missed Castor class commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 and Castor metadata file for latest changes commit | commitdiff | tree | snapshot
2017-12-14 gmungocJAL-2843 schema and code changes to save colour by... commit | commitdiff | tree | snapshot
2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience commit | commitdiff | tree | snapshot
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