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jalview.git
2020-02-14 Jim ProcterJAL-3529 more detailed asserts to detect whitespace... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3529 preferentially output source dbrefs or princip... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3529 failing test for bug commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3187 alternative solution - gather feature settings... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-1354 JAL-3528 fix bug from b594d516dac69eebcccdc743... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3449 getdown resilience change to launcher classpat... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3227 helper shell scripts for setting up a build... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3449 fix a getdownAppDir error introduced in previo... commit | commitdiff | tree | snapshot
2020-02-13 Ben SoaresJAL-3449 More tidying of build.gradle for CHANNEL selection commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 applet alignFrame needs new api method commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 first stab at ‘show CDS/Protein Settings’... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 view controller UI api method to show feature... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3187 convenience method on SplitContainerI to retri... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-1354 JAL-3528 report missing keys for MessageManage... commit | commitdiff | tree | snapshot
2020-02-12 Jim ProcterJAL-3407 release notes for JAL-3121 commit | commitdiff | tree | snapshot
2020-02-12 Ben SoaresJAL-3289 Updated doc/building.md to explain possible... commit | commitdiff | tree | snapshot
2020-02-12 Ben SoaresJAL-3523 No longer change CWD of getdown when invoked... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 release notes for JAL-3375 commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3376 highlighted in what’s new commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 - JAL-3376 JAL-3377 release notes commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 start of whats new for 2.11.1.0 commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3376 documentation for standard attributes for... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 release notes (JAL-3386 signoff, new-knowns... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 JAL-3508 move to 2.11.1.0 point release versio... commit | commitdiff | tree | snapshot
2020-02-08 Ben SoaresJAL-3179 Version fix for taskTree gradle task in gradle 6 commit | commitdiff | tree | snapshot
2020-02-03 Jim ProcterMerge branch 'task/JAL-3510-update-clover-to-4.4.1... commit | commitdiff | tree | snapshot
2020-02-03 Jim ProcterJAL-3510 JAL-3153 clover instrumentation for tests task/JAL-3510-update-clover-to-4.4.1 commit | commitdiff | tree | snapshot
2020-01-31 Ben SoaresJAL-3447 MSI installer for windows commit | commitdiff | tree | snapshot
2020-01-30 Jim ProcterJAL-3510 bump clover version in gradle build dependencies commit | commitdiff | tree | snapshot
2020-01-29 Ben SoaresJAL-3341 Increase number of lines looked at by test... commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-3341 debug for failing unit test bug/JAL-3341unitTestFails commit | commitdiff | tree | snapshot
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-3187 one more obsolete method removed commit | commitdiff | tree | snapshot
2020-01-24 Ben SoaresJAL-3394 Removed libjli.dylib symbolic link from embedd... commit | commitdiff | tree | snapshot
2020-01-24 Ben SoaresJAL-3394 Variable-ise output folders -- will work bette... commit | commitdiff | tree | snapshot
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap commit | commitdiff | tree | snapshot
2020-01-23 Ben SoaresJAL-3130 removed a debug message from build.gradle commit | commitdiff | tree | snapshot
2020-01-23 gmungocJAL-3121 update help page for GFF column 9 nested attri... commit | commitdiff | tree | snapshot
2020-01-23 Ben SoaresJAL-3130 Improved locations of AdoptOpenJDK JRE downloa... commit | commitdiff | tree | snapshot
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... commit | commitdiff | tree | snapshot
2020-01-17 Ben SoaresJAL-3252 Don't add java_location until we've got a... commit | commitdiff | tree | snapshot
2020-01-17 Ben SoaresJAL-3447 Minor improvement on file association creation commit | commitdiff | tree | snapshot
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3449_add_install4j_instal... commit | commitdiff | tree | snapshot
2020-01-16 Jim ProcterJAL-3474 release notes commit | commitdiff | tree | snapshot
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3474_lots_of_.cvsignore_f... commit | commitdiff | tree | snapshot
2020-01-13 Ben SoaresJAL-3210 gradle eclipse now uses/inserts utils/eclipse... commit | commitdiff | tree | snapshot
2020-01-10 Ben SoaresJAL-3477 getdown jars. This commit can be left out... bug/JAL-3477_memory_max_allocation commit | commitdiff | tree | snapshot
2020-01-10 Ben SoaresJAL-3477 updated getdown's jalview.bin.MemorySetting commit | commitdiff | tree | snapshot
2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax... commit | commitdiff | tree | snapshot
2020-01-09 Ben SoaresJAL-3477 getdown jars. This commit can be left out... commit | commitdiff | tree | snapshot
2020-01-09 Ben SoaresJAL-3477 Newer jalview.bin.MemorySetting jalview.bin... commit | commitdiff | tree | snapshot
2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189 commit | commitdiff | tree | snapshot
2020-01-09 Ben SoaresJAL-3477 getdown jars. This commit can be left out... commit | commitdiff | tree | snapshot
2020-01-09 Ben SoaresJAL-3477 New jalview.bin.MemorySetting jalview.bin... commit | commitdiff | tree | snapshot
2020-01-09 Ben SoaresJAL-3477 Javadoc, refactoring and slight changes to... commit | commitdiff | tree | snapshot
2020-01-08 Ben SoaresJAL-3393 Improved background image, SVG file, and added... commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3393 Improved background image, SVG file, and added... commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3393 Improved background image, and generating... commit | commitdiff | tree | snapshot
2020-01-07 soaresJAL-3210 Ensure skip transpile errors flag is 'false... commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3477 Fixed appbase override so it's optional\! commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3477 Added appbase override option at buildtime... commit | commitdiff | tree | snapshot
2020-01-06 Ben SoaresJAL-3447 minor corrections to cif and mmcif file associ... commit | commitdiff | tree | snapshot
2019-12-30 Ben SoaresJAL-3394 catch a null pointer exception, when URI not... commit | commitdiff | tree | snapshot
2019-12-20 soaresJAL-3210 Added a flag to skip transpile errors, now... commit | commitdiff | tree | snapshot
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... commit | commitdiff | tree | snapshot
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... commit | commitdiff | tree | snapshot
2019-12-19 gmungocMerge branch 'Jalview-JS/develop' of https://source... commit | commitdiff | tree | snapshot
2019-12-19 gmungocJAL-3487 updates to transpiler (redone for JS/Develop... commit | commitdiff | tree | snapshot
2019-12-19 Ben SoaresJAL-3210 better diagnostics for net.sf.j2s.core.jar... commit | commitdiff | tree | snapshot
2019-12-18 Ben SoaresJAL-3394 Fixed jalviews?:// scheme for macOS startup commit | commitdiff | tree | snapshot
2019-12-17 Ben SoaresJAL-3394 Added a 'jalview://' and 'jalviews://' parser... commit | commitdiff | tree | snapshot
2019-12-17 Ben SoaresJAL-3449 correctly catch absence of install4j in getdow... commit | commitdiff | tree | snapshot
2019-12-16 Ben SoaresJAL-3449 don't assume install4j jar in classpath of... commit | commitdiff | tree | snapshot
2019-12-13 Ben SoaresJAL-3394 improvements to the file association progress bar commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3394 jalviews scheme added commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3394 file not needed commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3447 Satisfactory file associations. cif, mcif... commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3447 Change to install4j template version, JAL... commit | commitdiff | tree | snapshot
2019-12-12 Jim ProcterJAL-2305 moved failing CrossRef tests to Functional_Fai... commit | commitdiff | tree | snapshot
2019-12-12 Jim ProcterJAL-3407 update release date for Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-12-10 Ben SoaresJAL-3394 Simplified media output from install4j commit | commitdiff | tree | snapshot
2019-12-09 Ben SoaresJAL-3449 More whitespace in installer. Tidying commit | commitdiff | tree | snapshot
2019-12-09 Ben SoaresJAL-3449 Fixed Info.plist file insertion. Simplified... commit | commitdiff | tree | snapshot
2019-12-09 Ben SoaresJAL-3449 Now parsing install4j XML file to edit values... commit | commitdiff | tree | snapshot
2019-12-08 Ben SoaresJAL-3449 Work in progress improving XML replacements... commit | commitdiff | tree | snapshot
2019-12-06 Ben SoaresJAL-3394 disableSigning=true when DEV commit | commitdiff | tree | snapshot
2019-12-06 Ben SoaresJAL-3394 Changed most of the token replacement for... commit | commitdiff | tree | snapshot
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... commit | commitdiff | tree | snapshot
2019-11-23 Ben SoaresJAL-3420 multiple file extensions for the same mime... commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3477 merging in 3477 commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3393 Improved background image for DMG finder windo... commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3449 adding an installer template version. Really... commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 added an install4j compiler var commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 JAL-3394 merged on install4j8 template commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresMerge branch 'improvement/JAL-3393_DMG_Finder_window_im... commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 Using .gitignore from Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 Using tidied build.gradle and gradle.propertie... commit | commitdiff | tree | snapshot
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better commit | commitdiff | tree | snapshot
2019-11-20 Ben SoaresJAL-3210 cache getdown config, remove jvmmem options... commit | commitdiff | tree | snapshot
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