jalview.git
2016-08-16 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr
2016-08-15 gmungocJAL-1841 better i18n text
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in...
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in...
2016-08-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of...
2016-08-12 gmungocJAL-1841 count (logo height) is valid pairs only; detec...
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering...
2016-08-12 gmungocJAL-1841, bug fix in rna SS consensus, additions to...
2016-08-12 gmungocJAL-2171 default SS symbol to existing (if present)
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item
2016-08-10 gmungocJAL-2124 i18n of "All" menu item
2016-08-10 gmungocJAL-2146 small optimisation (avoid String creation)
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos...
2016-08-08 gmungocJAL-1577 rebuild menus when secondary structure manuall...
2016-08-08 tcofoegbureplaced broken biojsmsa home link in jalveiw help
2016-08-08 gmungocJAL-2119 replaced link with a non-404 alternative
2016-08-08 gmungocJAL-2168 -nonews option also mentioned here
2016-08-08 gmungocJAL-2119 updates to invalid / obsolete help links
2016-08-08 gmungocJAL-2168 document '-nonews' parameter
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties
2016-08-05 gmungocJAL-2164 add transferred annotation to sequence
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant
2016-08-04 gmungocJAL-2008 handle fast mouse drag of feature ordering...
2016-08-04 gmungocJAL-2015 convert Color from colour picker to FeatureColour
2016-08-02 Jim ProcterJAL-2046 additional logic to suppress spurious implemen...
2016-08-02 Jim ProcterMerge branch 'efficiency/JAL-2034_JAL-1421' into develop
2016-08-02 Jim ProcterJAL-2034 show greyed out image during overview update
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import setting...
2016-08-01 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-08-01 tcofoegbuJAL-2164 bugfix to convert insCodes of '\000' to '...
2016-08-01 Jim ProcterMerge branch 'bug/JAL-2154projectMappings' into develop
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening task/JAL-2164_mcviewforoldjalviewprojects
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverEx...
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to...
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test...
2016-07-29 Jim ProcterJAL-2164 JAL-1772 explodeViews can be static, so make...
2016-07-29 tcofoegbuJAL-1957 JAL-1479 updated SIFTS user docs
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy...
2016-07-29 Jim ProcterJAL-2154 disable visual delay only after completed...
2016-07-29 Jim ProcterJAL-2154 register any new dataset codon frames only...
2016-07-29 Jim ProcterJAL-2154 only include mappings in dbref/alcodon in...
2016-07-29 tcofoegbuJAL-2157 fixed Jalview2xmlTest
2016-07-27 Jim ProcterJAL-2154 toString for forward references
2016-07-27 Jim ProcterMerge branch 'patch/JAL-2156_JAL-2163_saveSplitFrameFro...
2016-07-27 Jim ProcterJAL-2163 set title for the alignframe from restored... patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles
2016-07-27 Jim ProcterJAL-2156 resolve and add complementary views for saveAl...
2016-07-27 Jim ProcterJAL-2156 refactor saveState & saveAlignment to common...
2016-07-27 Jim ProcterJAL-2156 getter for AlignFrame(s) held in a splitframe
2016-07-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence...
2016-07-26 Jim ProcterJAL-2157 todo: verify parser/file format enums and...
2016-07-26 tcofoegbuJAL-2157 bugfix for issues from enum refactoring
2016-07-25 tcofoegbuJAL-2157 bugfix for regression from commit 82a6c8e2e25b...
2016-07-24 Jim ProcterJAL-2154 formatting
2016-07-24 Jim ProcterJAL-2154 keep track of incomplete sequences and report...
2016-07-24 Jim ProcterJAL-2154 systematic pattern for defining/resolving...
2016-07-23 Jim ProcterJAL-2154 patch the hack (Jalview2XML tests pass)
2016-07-22 tcofoegbuJAL-2148 Bugfix in structureImportSettings string-to...
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati...
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-20 gmungocJAL-2154 poke JSeq start/end into Vamsas sequence
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling additio...
2016-07-20 Jim ProcterJAL-1926 JAL-2106 don’t use PDB database constant as...
2016-07-20 Jim ProcterJAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA...
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not...
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus
2016-07-20 gmungocJAL-2023 avoid writing / loading empty mappings
2016-07-20 gmungocJAL-2023 JAL-1681 fixed bug in computing '+' for co...
2016-07-20 gmungocJAL-2068 AnnotationWorker create/update annotation...
2016-07-19 gmungocJAL-2068 small refactor to reuse shared method
2016-07-19 gmungocJAL-2068 update rather than recreate AlignmentAnnotatio...
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL...
2016-07-18 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-07-18 Jim ProcterJAL-666 patch JAL-1947 in applet where overview is...
2016-07-18 gmungocJAL-2105 check content of Ensembl REST ping response
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches...
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column...
2016-07-18 Jim ProcterJAL-2068 clearer instructions on how to use script...
2016-07-18 Jim ProcterJAL-2068 clarify comments
2016-07-18 Jim ProcterJAL-2068 scale annotation display character to width...
2016-07-18 Jim ProcterJAL-2121 cleanup TODO
2016-07-18 Jim ProcterJAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...
2016-07-18 gmungocJAL-1976 Spanish version of new message
2016-07-18 gmungocJAL-2015 restore check for null colour in paint()
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker...
2016-07-18 Jim ProcterJAL-2145 improvement: ensure conservation calculation...
2016-07-18 Jim ProcterJAL-2145 documentation of getWidth()
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