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jalview.git
2024-07-04
Jim Procter
Merge branch 'develop' into spike/JAL-4386_develop_tria...
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2024-07-04
Jim Procter
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-07-04
Renia Correya
JAL-4392 Updated the colouring of consensus logo
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2024-07-03
Jim Procter
JAL-3631 rebuild getdown jars after merge to develop
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2024-07-03
Jim Procter
Merge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
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2024-07-03
Renia Correya
JAL-4392 Code refactoring
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2024-07-03
Renia Correya
JAL-4436 Code refactoring
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2024-07-03
Renia Correya
JAL-4392 Code Refactoring
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2024-07-03
Renia Correya
JAL-4436 Implementation of add colour by secondary...
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2024-07-01
Ben Soares
JAL-3631 Slightly larger wizard
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2024-07-01
Ben Soares
JAL-3631 Harden defence against looping getdown relaunc...
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2024-06-29
Ben Soares
JAL-3631 JVL file with appbase now relaunches getdown
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2024-06-28
Ben Soares
JAL-3631 Made an isAdmin flag to work in Windows Admin...
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2024-06-28
Ben Soares
JAL-3830 Added some quotation marks to jalview.bat...
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2024-06-28
Ben Soares
JAL-3631 Remove the checkboxes from the Finish screen...
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2024-06-28
Jim Procter
JAL-4386 annotate internal nodes either side of partiti...
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2024-06-28
Jim Procter
JAL-4386 move provider label into a new attribute on...
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2024-06-28
Ben Soares
JAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and...
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2024-06-28
Ben Soares
JAL-3631 Change in user path for locally installed...
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2024-06-28
Ben Soares
JAL-3631 Change to Windows user-space default location...
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2024-06-28
Ben Soares
JAL-3631 Fixed a getdown Exception when launching Jalvi...
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2024-06-28
Ben Soares
JAL-3631 Adjustments to the Windows installer
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2024-06-27
Ben Soares
JAL-3631 spelling correction
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2024-06-27
Ben Soares
JAL-3631 Installers with separate actions for user...
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2024-06-27
Ben Soares
JAL-3631 Add property to let log4j know we're not runni...
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2024-06-27
Jim Procter
JAL-4386 account for null entries in sequence array...
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2024-06-27
Ben Soares
JAL-3631 Log4j logging to .jalview.log file when reques...
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2024-06-27
Jim Procter
Merge branch 'feature/JAL-4386_calculate_tree_using_sec...
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2024-06-27
Jim Procter
JAL-4386 allow score models to generate additional...
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2024-06-27
Jim Procter
JAL-4386 JAL-4411 factored out the test for a particula...
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2024-06-27
Jim Procter
JAL-4411 catch cases when 'ssStructFilePathNameInPDB...
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2024-06-27
Jim Procter
JAL-4411 handle Boolean from String when Jalview projec...
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2024-06-27
Renia Correya
JAL-4411 Fixed some test cases
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2024-06-27
Renia Correya
JAL-4411 Record source metadata in derived/transferred...
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2024-06-25
Ben Soares
JAL-3631 JAL-3384 Install4j launch now redirects STDOUT...
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2024-06-25
Ben Soares
JAL-3631 Use the icon file passed by install4j if a...
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2024-06-25
Ben Soares
JAL-3631 Allow icon file name to be passed to launcher...
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2024-06-25
Ben Soares
JAL-3631 Forgot to add this file for 'Change parity...
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2024-06-25
Ben Soares
JAL-3631 Tests for version comparisons and Jar version...
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2024-06-25
Ben Soares
JAL-3631 Change parity of comparison for convention
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2024-06-24
Ben Soares
JAL-3631 Report getCanonicalPath for installer appdir
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2024-06-24
Ben Soares
JAL-3631 Check Implementation-Version of getdown-launch...
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2024-06-21
Ben Soares
JAL-3631 updated getdown jars
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2024-06-21
Ben Soares
Merge branch 'develop' into feature/JAL-3631_allow_jalv...
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2024-06-21
Ben Soares
JAL-3631 Changed label for consistency
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2024-06-21
Jim Procter
Merge branch 'improvement/JAL-4409_implement_extra_sche...
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2024-06-21
Ben Soares
Merge branch 'improvement/JAL-4409_implement_extra_sche...
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2024-06-21
Ben Soares
JAL-4409 Add two empty args to getdown call from instal...
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2024-06-21
Ben Soares
JAL-4409 Don't merge JVL configs when changing appbase
improvement/JAL-4409_implement_extra_schemes_in_getdown
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2024-06-20
Ben Soares
JAL-4409 Use fixed 'latest' artifact URL
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2024-06-20
Ben Soares
JAL-4409 Changes in BUILD channel appbase to tie in...
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2024-06-20
Ben Soares
JAL-3631 Now sending launcher.appdir from within getdown
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2024-06-19
Ben Soares
JAL-3631 Rename/rationalise informational system proper...
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2024-06-18
Ben Soares
JAL-3631 macos dev install script incorporated into...
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2024-06-18
Ben Soares
JAL-4358 slight improvement to detecting desktop creati...
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2024-06-18
Ben Soares
JAL-3631 gradle-build-and-re-install script, works...
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2024-06-18
Ben Soares
JAL-3631 Substantial additions to Getdown (through...
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2024-06-18
Renia Correya
JAl-4392 Hide secondary structure consensus with no...
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2024-06-17
Ben Soares
JAL-3631 Allow quick deployment of gradle build on...
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2024-06-14
Ben Soares
Merge branch 'develop' into feature/JAL-3631_allow_jalv...
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2024-06-14
Ben Soares
JAL-3631 Got rid of the USER_EXECUTABLE_NAME as it...
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2024-06-14
Ben Soares
JAL-3631 Removed old non-user launcher. Labelled USERSP...
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2024-06-14
Ben Soares
JAL-3631 JAL-4104 More consistent system property names...
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2024-06-14
Ben Soares
JAL-3631 Allow -Pinstall4j_build_ids=MACOS-AARCH64...
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2024-06-13
Ben Soares
JAL-3845 Add a popup error message, with instructions...
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2024-06-13
Ben Soares
JAL-3631 New Installer icons. Getdown check that the...
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2024-06-12
Ben Soares
JAL-3631 Name changes to system properties and a fallba...
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2024-06-12
Ben Soares
JAL-3631 Spot system property triggers in getdown to...
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2024-06-12
Ben Soares
JAL-3631 Add a new launcher in install4j to pass new...
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2024-06-12
Renia Correya
JAL-4392 Fixed failed test cases
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2024-06-12
Renia Correya
JAL-4392 Feature implementation of group consensus...
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2024-06-12
Renia Correya
JAL-4426 Fix when multiple secondary structure annotati...
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2024-06-10
Ben Soares
Merge branch 'bug/JAL-4421_customise_volume_name_of_DMG...
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2024-06-10
Jim Procter
JAL-4159 remove errant jalview source .zip
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2024-06-07
Renia Correya
JAL-4426 Defect fix to display number of sequences...
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2024-06-07
Ben Soares
Merge branch 'develop' into improvement/JAL-4409_implem...
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2024-06-07
Ben Soares
JAL-4421 Update the dev_masos_installer.sh to use new...
bug/JAL-4421_customise_volume_name_of_DMG_installers
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2024-06-06
Ben Soares
JAL-4420 Added some more filename extensions
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2024-06-06
Ben Soares
JAL-4072 Add zip-slip check in getdown
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2024-06-06
Jim Procter
Merge branch 'bug/JAL-4421_customise_volume_name_of_DMG...
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2024-06-06
Renia Correya
JAL-4426 Reword tool tip and status bar text
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2024-06-06
Ben Soares
JAL-4358 Add the JALVIEW: CREATED DESKTOP line to java...
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2024-06-06
Renia Correya
JAL 4392 Reformat Secondary structure description text
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2024-06-06
Renia Correya
JAL-4426 Add feature to show number of sequences
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2024-06-05
Ben Soares
JAL-4420 Allow associated files to be dragged on separa...
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2024-06-05
Ben Soares
JAL-4409 Small refactoring of ArgParserUtils to allow...
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2024-06-05
Ben Soares
Merge branch 'develop' into bug/JAL-4421_customise_volu...
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2024-06-05
Ben Soares
JAL-4421 Downgrading ds_store to 1.3.0 for build server...
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2024-06-05
Renia Correya
JAL-4392 Bug fixing and code refactoring.
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2024-06-05
Ben Soares
JAL-4421 Configuration for positioning icons in DMG
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2024-06-05
Ben Soares
JAL-4421 Add --appname --appxpos --appypos to position...
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2024-06-04
Ben Soares
JAL-4421 Remove the disk_image_alias from the backgroun...
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2024-06-04
Ben Soares
JAL-4421 Allow JSON config file to be options (no icon...
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2024-06-04
Jim Procter
Merge branch 'improvement/JAL-4409_implement_extra_sche...
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2024-06-04
Jim Procter
JAL-4409 don't ignore gitignore !
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2024-06-04
Jim Procter
JAL-4418 first development release for 2.11.4.0 - relea...
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2024-06-04
Jim Procter
Merge branch 'feature/JAL-4159_pasimap' into develop
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2024-06-04
Jim Procter
Merge branch 'releases/Release_2_11_3_Branch' into...
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2024-06-04
Ben Soares
JAL-4421 Put correct VolumeIcon.icns file onto DMG...
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2024-06-03
Ben Soares
JAL-4421 Icns to use as .VolumeIcon.icns in DMG volumes...
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