jalview.git
2024-07-04 Jim ProcterMerge branch 'develop' into spike/JAL-4386_develop_tria...
2024-07-04 Jim ProcterMerge branch 'feature/JAL-4386_calculate_tree_using_sec...
2024-07-04 Renia CorreyaJAL-4392 Updated the colouring of consensus logo
2024-07-03 Jim ProcterJAL-3631 rebuild getdown jars after merge to develop
2024-07-03 Jim ProcterMerge branch 'feature/JAL-3631_allow_jalview_to_work_fr...
2024-07-03 Renia CorreyaJAL-4392 Code refactoring
2024-07-03 Renia CorreyaJAL-4436 Code refactoring
2024-07-03 Renia CorreyaJAL-4392 Code Refactoring
2024-07-03 Renia CorreyaJAL-4436 Implementation of add colour by secondary...
2024-07-01 Ben SoaresJAL-3631 Slightly larger wizard
2024-07-01 Ben SoaresJAL-3631 Harden defence against looping getdown relaunc...
2024-06-29 Ben SoaresJAL-3631 JVL file with appbase now relaunches getdown
2024-06-28 Ben SoaresJAL-3631 Made an isAdmin flag to work in Windows Admin...
2024-06-28 Ben SoaresJAL-3830 Added some quotation marks to jalview.bat...
2024-06-28 Ben SoaresJAL-3631 Remove the checkboxes from the Finish screen...
2024-06-28 Jim ProcterJAL-4386 annotate internal nodes either side of partiti...
2024-06-28 Jim ProcterJAL-4386 move provider label into a new attribute on...
2024-06-28 Ben SoaresJAL-3631 Group USERSPACE and SYSTEMSPACE tasks (and...
2024-06-28 Ben SoaresJAL-3631 Change in user path for locally installed...
2024-06-28 Ben SoaresJAL-3631 Change to Windows user-space default location...
2024-06-28 Ben SoaresJAL-3631 Fixed a getdown Exception when launching Jalvi...
2024-06-28 Ben SoaresJAL-3631 Adjustments to the Windows installer
2024-06-27 Ben SoaresJAL-3631 spelling correction
2024-06-27 Ben SoaresJAL-3631 Installers with separate actions for user...
2024-06-27 Ben SoaresJAL-3631 Add property to let log4j know we're not runni...
2024-06-27 Jim ProcterJAL-4386 account for null entries in sequence array...
2024-06-27 Ben SoaresJAL-3631 Log4j logging to .jalview.log file when reques...
2024-06-27 Jim ProcterMerge branch 'feature/JAL-4386_calculate_tree_using_sec...
2024-06-27 Jim ProcterJAL-4386 allow score models to generate additional...
2024-06-27 Jim ProcterJAL-4386 JAL-4411 factored out the test for a particula...
2024-06-27 Jim ProcterJAL-4411 catch cases when 'ssStructFilePathNameInPDB...
2024-06-27 Jim ProcterJAL-4411 handle Boolean from String when Jalview projec...
2024-06-27 Renia CorreyaJAL-4411 Fixed some test cases
2024-06-27 Renia CorreyaJAL-4411 Record source metadata in derived/transferred...
2024-06-25 Ben SoaresJAL-3631 JAL-3384 Install4j launch now redirects STDOUT...
2024-06-25 Ben SoaresJAL-3631 Use the icon file passed by install4j if a...
2024-06-25 Ben SoaresJAL-3631 Allow icon file name to be passed to launcher...
2024-06-25 Ben SoaresJAL-3631 Forgot to add this file for 'Change parity...
2024-06-25 Ben SoaresJAL-3631 Tests for version comparisons and Jar version...
2024-06-25 Ben SoaresJAL-3631 Change parity of comparison for convention
2024-06-24 Ben SoaresJAL-3631 Report getCanonicalPath for installer appdir
2024-06-24 Ben SoaresJAL-3631 Check Implementation-Version of getdown-launch...
2024-06-21 Ben SoaresJAL-3631 updated getdown jars
2024-06-21 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv...
2024-06-21 Ben SoaresJAL-3631 Changed label for consistency
2024-06-21 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-06-21 Ben SoaresMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-06-21 Ben SoaresJAL-4409 Add two empty args to getdown call from instal...
2024-06-21 Ben SoaresJAL-4409 Don't merge JVL configs when changing appbase improvement/JAL-4409_implement_extra_schemes_in_getdown
2024-06-20 Ben SoaresJAL-4409 Use fixed 'latest' artifact URL
2024-06-20 Ben SoaresJAL-4409 Changes in BUILD channel appbase to tie in...
2024-06-20 Ben SoaresJAL-3631 Now sending launcher.appdir from within getdown
2024-06-19 Ben SoaresJAL-3631 Rename/rationalise informational system proper...
2024-06-18 Ben SoaresJAL-3631 macos dev install script incorporated into...
2024-06-18 Ben SoaresJAL-4358 slight improvement to detecting desktop creati...
2024-06-18 Ben SoaresJAL-3631 gradle-build-and-re-install script, works...
2024-06-18 Ben SoaresJAL-3631 Substantial additions to Getdown (through...
2024-06-18 Renia CorreyaJAl-4392 Hide secondary structure consensus with no...
2024-06-17 Ben SoaresJAL-3631 Allow quick deployment of gradle build on...
2024-06-14 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv...
2024-06-14 Ben SoaresJAL-3631 Got rid of the USER_EXECUTABLE_NAME as it...
2024-06-14 Ben SoaresJAL-3631 Removed old non-user launcher. Labelled USERSP...
2024-06-14 Ben SoaresJAL-3631 JAL-4104 More consistent system property names...
2024-06-14 Ben SoaresJAL-3631 Allow -Pinstall4j_build_ids=MACOS-AARCH64...
2024-06-13 Ben SoaresJAL-3845 Add a popup error message, with instructions...
2024-06-13 Ben SoaresJAL-3631 New Installer icons. Getdown check that the...
2024-06-12 Ben SoaresJAL-3631 Name changes to system properties and a fallba...
2024-06-12 Ben SoaresJAL-3631 Spot system property triggers in getdown to...
2024-06-12 Ben SoaresJAL-3631 Add a new launcher in install4j to pass new...
2024-06-12 Renia CorreyaJAL-4392 Fixed failed test cases
2024-06-12 Renia CorreyaJAL-4392 Feature implementation of group consensus...
2024-06-12 Renia CorreyaJAL-4426 Fix when multiple secondary structure annotati...
2024-06-10 Ben SoaresMerge branch 'bug/JAL-4421_customise_volume_name_of_DMG...
2024-06-10 Jim ProcterJAL-4159 remove errant jalview source .zip
2024-06-07 Renia CorreyaJAL-4426 Defect fix to display number of sequences...
2024-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem...
2024-06-07 Ben SoaresJAL-4421 Update the dev_masos_installer.sh to use new... bug/JAL-4421_customise_volume_name_of_DMG_installers
2024-06-06 Ben SoaresJAL-4420 Added some more filename extensions
2024-06-06 Ben SoaresJAL-4072 Add zip-slip check in getdown
2024-06-06 Jim ProcterMerge branch 'bug/JAL-4421_customise_volume_name_of_DMG...
2024-06-06 Renia CorreyaJAL-4426 Reword tool tip and status bar text
2024-06-06 Ben SoaresJAL-4358 Add the JALVIEW: CREATED DESKTOP line to java...
2024-06-06 Renia CorreyaJAL 4392 Reformat Secondary structure description text
2024-06-06 Renia CorreyaJAL-4426 Add feature to show number of sequences
2024-06-05 Ben SoaresJAL-4420 Allow associated files to be dragged on separa...
2024-06-05 Ben SoaresJAL-4409 Small refactoring of ArgParserUtils to allow...
2024-06-05 Ben SoaresMerge branch 'develop' into bug/JAL-4421_customise_volu...
2024-06-05 Ben SoaresJAL-4421 Downgrading ds_store to 1.3.0 for build server...
2024-06-05 Renia CorreyaJAL-4392 Bug fixing and code refactoring.
2024-06-05 Ben SoaresJAL-4421 Configuration for positioning icons in DMG
2024-06-05 Ben SoaresJAL-4421 Add --appname --appxpos --appypos to position...
2024-06-04 Ben SoaresJAL-4421 Remove the disk_image_alias from the backgroun...
2024-06-04 Ben SoaresJAL-4421 Allow JSON config file to be options (no icon...
2024-06-04 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-06-04 Jim ProcterJAL-4409 don't ignore gitignore !
2024-06-04 Jim ProcterJAL-4418 first development release for 2.11.4.0 - relea...
2024-06-04 Jim ProcterMerge branch 'feature/JAL-4159_pasimap' into develop
2024-06-04 Jim ProcterMerge branch 'releases/Release_2_11_3_Branch' into...
2024-06-04 Ben SoaresJAL-4421 Put correct VolumeIcon.icns file onto DMG...
2024-06-03 Ben SoaresJAL-4421 Icns to use as .VolumeIcon.icns in DMG volumes...
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