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jalview.git
2008-12-19
jprocter
new sort by length method, justify edit menu entries...
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2008-12-19
jprocter
catch null pointer exception when no colourscheme is...
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2008-12-19
jprocter
simple transformation of feature types like dbref and...
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2008-12-19
jprocter
todo
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2008-12-19
jprocter
wsdbfetch parameter change again (uniprotkb is dbname...
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2008-12-19
jprocter
avoid null pointer exception when no features visible
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2008-12-19
jprocter
avoid null pointer exception when groupName is not set
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2008-12-19
jprocter
left and right justify method
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2008-12-19
jprocter
sort by length
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2008-12-15
jprocter
added (and enabled) switch to store gff source string...
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2008-12-15
jprocter
temporary fix and note about null feature group mucking...
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2008-12-15
jprocter
warning for failed parsing of newick strings
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2008-12-15
jprocter
new callback handler allowing threads that request...
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2008-12-15
jprocter
structureState element to structure view Id is a many...
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2008-12-08
jprocter
DAS feature scores are parsed into floats on sequence...
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2008-12-08
jprocter
output average score to stdout
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2008-12-08
jprocter
display feature score in tooltip
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2008-12-08
jprocter
order by feature documentation
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2008-12-08
jprocter
experimental buttons for sort on score/density and...
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2008-12-08
jprocter
new sort functions for ordering sequence by annotated...
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2008-12-05
jprocter
added location of menu option and keystroke
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2008-12-05
jprocter
support for multiple accession retrieval from a databas...
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2008-12-04
jprocter
added local das sequence source CLI and documentation
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2008-12-04
jprocter
fetch database references for all EBI db + selected...
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2008-12-04
jprocter
sequence fetchers generated for local das sequence...
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2008-12-04
jprocter
das source browser uses local source method from jalvie...
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2008-12-04
jprocter
allow sequence source to be specified as sequence:mydas...
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2008-12-04
jprocter
local das source properties string constants and routin...
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2008-12-04
jprocter
properly catch exceptions from querying server with...
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2008-12-04
jprocter
minimise exceptions for bad uniprot ids
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2008-12-04
jprocter
select source by implementation class
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2008-12-04
jprocter
fix null pointer exception for sources which don't...
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2008-12-04
jprocter
clarity of tree menu calculation widget name
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2008-12-01
jprocter
match case switch should work for both sequence ID...
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2008-11-12
jprocter
beginning documentation for new hidecol/hiderep and...
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2008-11-12
jprocter
todo for documenting selection sharing
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2008-11-12
jprocter
autoscroll option
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2008-11-12
jprocter
new capabilities and note on 'try vamsas'
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2008-11-12
jprocter
new features/resolved for 2.4.1.
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2008-11-12
jprocter
refactored to propery separate addToDocument,addFromDoc...
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2008-11-12
jprocter
new viewport IDs and jalview XML storage/sync in vamsas...
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2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
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2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
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2008-11-12
jprocter
selection sending
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2008-11-12
jprocter
new ID constructor and selection sending
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2008-11-12
jprocter
new constructors for setting IDs
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2008-11-12
jprocter
new window discovery and alignment view navigation...
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2008-11-12
jprocter
jar inputstream provider enabling multiple jar entries...
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2008-11-12
jprocter
automatic scrolling switch
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2008-11-12
jprocter
updated library supporting exchange of selection messages
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2008-11-12
jprocter
automatic scrolling option added to view
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2008-11-12
jprocter
jdk1.2 compatibility
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2008-11-12
jprocter
minor translation bug
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2008-11-12
jprocter
javadoc
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2008-11-12
jprocter
jalview XML schema update for 2.4.1 (or 2.5?) introduci...
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2008-11-12
jprocter
new listener/sender for selection events
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2008-11-12
jprocter
gracefully translate ambigous nucleotides as 'X'
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2008-11-12
jprocter
bugfix to safely deal with server exception resulting...
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2008-11-12
jprocter
added todo regarding import of GFF2 key=value attributes
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2008-11-12
jprocter
avoid exception if search returns valid object but...
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2008-11-12
jprocter
new copy constructor and intersect method
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2008-11-12
jprocter
involvesSequence to check if searchResults intersect...
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2008-11-12
jprocter
javadoc and new method to get alignment sequence index...
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2008-11-04
jprocter
bugfix db ref retrieve routine so it removes dead query...
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2008-11-04
jprocter
implemented embl validation properly
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2008-11-04
jprocter
implemented embl validation properly
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2008-11-04
jprocter
links for non-positional features
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2008-11-04
jprocter
comment about escaping regex properly
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2008-11-04
jprocter
optional display of database refs and non-positional...
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2008-11-04
jprocter
optional display of database refs and non-positional...
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2008-11-04
jprocter
beginning of implementation of new properties for hide...
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2008-11-04
jprocter
bugfix for transfer of user defined colourscheme from...
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2008-11-04
jprocter
application specific validIOformat method
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2008-09-26
jprocter
added .DSA files to list of jar signatures to be remove...
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2008-09-24
jprocter
fixed sequence associated annotation reading bug where...
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2008-09-16
jprocter
added bugfix note for 2.4
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2008-09-16
jprocter
java 1.1 compatibility
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2008-09-16
jprocter
fix exception raised when JNet concise files with no...
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2008-09-09
jprocter
links associated with non-positional features do not...
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2008-09-09
jprocter
show non-positional features with same code as positona...
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2008-09-09
jprocter
refactored feature tooltip generation code to static...
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2008-09-09
jprocter
non-positional features are displayed with additional...
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2008-09-09
jprocter
tooltip contains non-positional features and popup...
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2008-09-09
jprocter
make URL links from description string when link is...
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2008-09-08
jprocter
view settings in view submenu and user preferences...
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2008-09-08
jprocter
introduced and commented out code for generating URLs...
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2008-09-04
jprocter
release property includes -b or -t to indicate what...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-08-27
jprocter
no newline after licence comment
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2008-08-27
jprocter
added Release_2_4_branch
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2008-08-27
jprocter
fix vamas homedir link
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2008-08-27
jprocter
added keystore config properties
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2008-08-26
jprocter
update and test release build system
Release_2_4
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2008-08-26
jprocter
2.4 release documentation update menus, service refs...
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2008-08-26
jprocter
update Jpred3 service referenec
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2008-08-26
jprocter
allow '|' to be entered in URL text box and added regex...
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2008-08-26
jprocter
set title of viewer frame after file has been loaded...
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2008-08-26
jprocter
future bug fix todo
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2008-08-26
jprocter
new thread for initting of DBRefFetcher with latest...
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2008-08-26
jprocter
uses shared singleton from jalview.gui.SequenceFetcher...
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