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jalview.git
2016-05-19
gmungoc
JAL-2114 parser + tests for GenBank location descriptors
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2016-05-18
tcofoegbu
merge
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2016-05-18
tcofoegbu
JAL-1563 User documentation for Uniprot FTS
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2016-05-18
tcofoegbu
JAL-1563 smarter support for advanced querying of Unipr...
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2016-05-18
gmungoc
JAL-2049 set sequence feature group to "Jalview" for...
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2016-05-18
gmungoc
JAL-2049 use HGVS notation for variant on protein residue
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2016-05-17
tcofoegbu
JAL-2106 JAL-1926 updated source doc for set/getSourceDBRef
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2016-05-17
tcofoegbu
merge
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2016-05-17
tcofoegbu
JAL-1270 Fixed anntatedPDBFileInputTest and updated...
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2016-05-13
gmungoc
JAL-2105 capture Ensembl data version, check REST versi...
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2016-05-12
gmungoc
JAL-2104 format tooltips to wrap correctly
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2016-05-11
tcofoegbu
JAL-1563 updated uniprot FTS config file
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2016-05-09
tcofoegbu
merge
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2016-05-09
tcofoegbu
JAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin...
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2016-05-09
tcofoegbu
JAL-2102 implemented improvement to round FTS's numberi...
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2016-05-09
gmungoc
JAL-2098 identify feature file with "<" in feature...
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2016-05-09
gmungoc
JAL-2018 export graduated feature colours correctly
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2016-05-06
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-05-06
Jim Procter
JAL-192 fix javadoc
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2016-05-06
Jim Procter
JAL-192 JAL-2099 unused variables
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2016-05-06
Jim Procter
JAL-1551 formatting
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2016-05-06
Jim Procter
JAL-192 JAL-2099 reuse refactored scale code for wrappe...
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2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
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2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
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2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from renderin...
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2016-05-06
Jim Procter
JAL-2100 centre triangles on hidden column vertical...
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2016-05-06
Jim Procter
JAL-2100 optimisation
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2016-05-06
Jim Procter
JAL-2100 triangles shown below in jvdesktop unwrapped...
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2016-05-06
Jim Procter
JAL-192 patch off-by-one for pathological gap case
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2016-05-05
gmungoc
JAL-2068 better documentation in example script
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2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
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2016-05-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-05-04
gmungoc
JAL-2074 reinstated xerces-impl.jar
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2016-05-04
Jim Procter
Revert "JAL-2074 removed xerces to explore wierdness"
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2016-05-04
gmungoc
JAL-2092 hide columns with/without feature
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2016-05-04
gmungoc
JAL-2074 corrected classpathentry for Groovy 2.4.6
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2016-05-04
gmungoc
Merge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
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2016-05-04
tcofoegbu
merge
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2016-05-04
tcofoegbu
JAL-1563 JAL-2091 Added total result count to Uniprot...
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2016-05-04
gmungoc
JAL-2090 removed test for Java > 1.1 to enable transparency
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2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
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2016-05-03
Jim Procter
Merge branch 'r291_docs' into develop
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2016-05-03
tcofoegbu
JAL-2091 disable pagination buttons during initialisation
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2016-05-03
tcofoegbu
JAL-1563 JAL-2091 Added generic pagination for FTS...
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2016-05-02
tcofoegbu
JAL-1563 Fixed Uniprot FTS result-set count error,...
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2016-05-02
Jim Procter
JAL-1270 move some Network tests to External (require...
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2016-05-02
Jim Procter
JAL-1270 capitalise test groups
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2016-05-02
Jim Procter
JAL-2089 JAL-1551 formatting
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2016-05-02
Jim Procter
JAL-2089 release 2.9.1 entry in release notes
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2016-04-29
tcofoegbu
merge
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2016-04-29
tcofoegbu
JAL-1563 house keeping/updated API doc for new method...
merge/JAL-1563_uniprot-free-text-search
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2016-04-29
tcofoegbu
JAL-1563 Further increased swing timer for search textf...
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2016-04-29
gmungoc
JAL-2051 better checking of retrieved / duplicated...
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2016-04-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-04-29
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
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2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
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2016-04-29
Jim Procter
JAL-192 scale origin relative to start of reference...
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2016-04-29
Jim Procter
JAL-966 JAL-1553 todo: remove UI components from Colum...
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2016-04-29
Jim Procter
JAL-1551 formatting
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2016-04-29
Jim Procter
JAL-192 ‘efficiently’ locate visible bounds for a seque...
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2016-04-29
Jim Procter
JAL-1551 formatting
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2016-04-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-04-28
tcofoegbu
JAL-1563 increased swing timer for search action from...
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2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
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2016-04-28
tcofoegbu
JAL-1563 fixed failing tests for FTS Rest Client core
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2016-04-28
tcofoegbu
JAL-1563 Increased default response size to 500, and...
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2016-04-28
tcofoegbu
JAL-1563 Implemented hack to make table both scrollable...
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2016-04-27
tcofoegbu
JAL-1563 Added Id (Uniprot Id) to the dynamic column...
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2016-04-27
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-27
Jim Procter
JAL-192 fix off-by-one for alignment ruler with no...
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2016-04-27
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-27
Jim Procter
JAL-192 show reference sequence position and residue...
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2016-04-27
tcofoegbu
JAL-1563 Added fix to prevent swing timer from reinitia...
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2016-04-27
Jim Procter
JAL-1366 JAL-2086 reinstate bolding of reference sequence
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2016-04-27
Jim Procter
JAL-2085 JAL-2086 fix hiddenRepSequence and new referen...
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2016-04-27
tcofoegbu
JAL-1563 further modificaiton of the uniprot data colum...
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2016-04-27
tcofoegbu
JAL-1563 Modified Uniprot data column configurations...
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2016-04-27
tcofoegbu
re-enabled new uniprot sequence fetcher on spike branch
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2016-04-26
Jim Procter
JAL-2079 fix broken cherry-pick conflict merge
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2016-04-26
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-04-26
Jim Procter
JAL-2079 update GPL header for new Xfam tests
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2016-04-26
Jim Procter
JAL-2079 use new service to retrieve Rfam Seed alignment
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2016-04-26
Jim Procter
JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
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2016-04-26
Jim Procter
JAL-2079 disable RFAM(Full) source until we can retriev...
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2016-04-26
Jim Procter
JAL-2079 update URL for RFAM and PFAM sources
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2016-04-26
tcofoegbu
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2016-04-26
Jim Procter
JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
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2016-04-26
tcofoegbu
JAL-1563 reverted to old uniprot fetcher to enable...
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2016-04-26
Jim Procter
JAL-2077 reinstate JAL-1554 fix for left-then-right...
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2016-04-26
Jim Procter
JAL-2077 reinstate annotation label popup by handling...
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2016-04-26
gmungoc
JAL-1981 catch any exception when setting QuaQua look...
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2016-04-26
Jim Procter
Merge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4
groovy/JAL-2074_upgradeto2.4.4
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2016-04-26
Jim Procter
Merge branch 'bug/JAL-2080_javaws_slow_291' into develop
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2016-04-26
Jim Procter
JAL-2080 removed all 'Class-Path' references in libs
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2016-04-26
Jim Procter
JAL-2080 removed classpath references to Xerces and...
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2016-04-26
Jim Procter
JAL-2080 mark jalview.jar as main jar resource
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2016-04-26
tcofoegbu
merge
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2016-04-26
tcofoegbu
JAL-2071 improvement to get column data files as InputS...
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2016-04-26
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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