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jalview.git
2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui commit | commitdiff | tree | snapshot
2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils commit | commitdiff | tree | snapshot
2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager. commit | commitdiff | tree | snapshot
2022-03-11 Mateusz WarownyJAL-3878 Add hasPresets and hasParameters utility metho... commit | commitdiff | tree | snapshot
2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services. commit | commitdiff | tree | snapshot
2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction. commit | commitdiff | tree | snapshot
2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions. commit | commitdiff | tree | snapshot
2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to... commit | commitdiff | tree | snapshot
2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes commit | commitdiff | tree | snapshot
2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods commit | commitdiff | tree | snapshot
2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interacti... commit | commitdiff | tree | snapshot
2022-03-02 Mateusz WarownyJAL-3878 Fix typo in method name (getAlignemnt) commit | commitdiff | tree | snapshot
2022-03-02 Mateusz WarownyJAL-3878 Add serviceExecutor to AlignmentViewport. commit | commitdiff | tree | snapshot
2022-02-28 Mateusz WarownyJAL-3878 Separate server job handle from task's sub... commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Provide javadoc for WebServiceClientI interface commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Create skeleton for alignment service action commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Create abstract base class for actions. commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Fix typo in getTooltip method name commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Move WebServiceJob class to jalview.ws2.api... commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Move CredentialType class to jalview.ws2.api... commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Create TaskEventListener interface. commit | commitdiff | tree | snapshot
2022-02-18 Mateusz WarownyJAL-3878 Create action and task interfaces. commit | commitdiff | tree | snapshot
2022-02-17 Mateusz WarownyJAL-3878 Add interactive flag to WebService class commit | commitdiff | tree | snapshot
2022-02-17 Mateusz WarownyJAL-3878 Create web service class - container for servi... commit | commitdiff | tree | snapshot
2022-02-17 Mateusz WarownyJAL-3878 Add WebServiceJob class. commit | commitdiff | tree | snapshot
2022-02-16 Mateusz WarownyJAL-3878 Add interfaces for classes dealing with server... commit | commitdiff | tree | snapshot
2022-02-15 Mateusz WarownyJAL-3878 Add universal id generator to MathUtils. commit | commitdiff | tree | snapshot
2021-12-23 Mateusz WarownyMerge branch 'JAL-3927_ws_preferences_dialog_fix' into... alpha/JAL-3066_Jalview_212_slivka-integration commit | commitdiff | tree | snapshot
2021-12-23 Mateusz WarownyMerge branch 'update/JAL-3066_updated_testng' into... commit | commitdiff | tree | snapshot
2021-11-25 Mateusz WarownyJAL-3927 Make url checks asynchronous in preferences... commit | commitdiff | tree | snapshot
2021-11-23 Mateusz WarownyJAL-3066 Fix ambiguous assertEquals casting values... commit | commitdiff | tree | snapshot
2021-11-23 Ben SoaresJAL-3066 Vastly updated testng libs commit | commitdiff | tree | snapshot
2021-11-18 Mateusz WarownyJAL-3066 Remove redundant throws declaration from Slivk... commit | commitdiff | tree | snapshot
2021-11-16 Mateusz WarownyMerge branch 'JAL-3866_RNAalifold-slivka-client' into... commit | commitdiff | tree | snapshot
2021-11-16 Mateusz WarownyMerge branch 'alpha/JAL-3899_deuniquify_refactor' into... commit | commitdiff | tree | snapshot
2021-10-07 Mateusz WarownyJAL-3899 Replace prints with logger messages. alpha/JAL-3899_deuniquify_refactor commit | commitdiff | tree | snapshot
2021-10-06 Mateusz WarownyJAL-3899 Update usages of uniquify and deuniquify. commit | commitdiff | tree | snapshot
2021-10-06 Mateusz WarownyJAL-3899 Refactor sequence de/uniquification. commit | commitdiff | tree | snapshot
2021-09-02 Mateusz WarownyAdd RNAalifold service instance to slivka web services. JAL-3866_RNAalifold-slivka-client commit | commitdiff | tree | snapshot
2021-07-29 Mateusz WarownyMerge branch 'improvement/JAL-3848_slivka_0.8' into... commit | commitdiff | tree | snapshot
2021-07-27 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into... commit | commitdiff | tree | snapshot
2021-07-27 Mateusz WarownyMerge commit '0b438477b16470202bddfecb54e0587036b37202... commit | commitdiff | tree | snapshot
2021-07-27 Mateusz WarownyJAL-3066 Fix NullPointerException thrown when showing... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3854 patched SeqSeqUtils.deUniquify to not use... improvement/JAL-3848_slivka_0.8 commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-2994 disable tests for FileUtils path search method... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 slivka preferences in javascript commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 reinstate Fetch DB References submenu commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 update jalview core with slivka classes, examp... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 add compbio and jalview to direct connection... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3853 - tweak test again - since failed a few commit... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 update swingJS runtime and transpiler to 3.3.1 commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterMerge branch 'improvement/JAL-3848_slivka_0.8' of https... commit | commitdiff | tree | snapshot
2021-07-23 Mateusz WarownyJAL-3848 Update slivka client javajs library. commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 enable slivka services dialog in JalviewJS commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3853 JAL-1870 toggle to enable/disable posterior... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3853 JAL-1870 patch tests for annotation colour... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-1950 patch groovy bootstrap for importing hmmer3... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3853 patch sequence annotation report code and... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 ensure annotation from a service gets a calcId... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 don’t include sequence limits in sequence... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 - actually test the Slivka and JABAWS disorder... commit | commitdiff | tree | snapshot
2021-07-21 Mateusz WarownyJAL-3848 print exception for failed align jobs commit | commitdiff | tree | snapshot
2021-07-21 Mateusz WarownyJAL-3848 add latest slivka-client fixes. commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyMerge branch 'jpred-fix' into bug/JAL-3807_jpred-with... bug/JAL-3807_jpred-with-slivka commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyJAL-3807 Fix SlivkaWSInstance not fetching alignments. commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyMerge branch 'bug/JAL-3849_aacon-parameters' into impro... commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyJAL-3690 Remove references to old AlignCalcManager. bug/JAL-3849_aacon-parameters commit | commitdiff | tree | snapshot
2021-07-08 Mateusz WarownyJAL-3848 SlivkaParamSet: reformat code and add service... commit | commitdiff | tree | snapshot
2021-07-08 Mateusz WarownyJAL-3848 Update slivka client library. commit | commitdiff | tree | snapshot
2021-07-08 Mateusz WarownyJAL-3849 Remove join() which blocked the ui. commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3807 - Add single sequence capabilities to jws2... commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3807 - Move new JPred client to the jws2 package. commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3807 - Re-implement results processing. commit | commitdiff | tree | snapshot
2021-02-22 MateuszJAL-3807 JPred can now successfully submit and track... commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3809_ws_params_dialog_fix' into... commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3810_annotation_ws_stopping_abrup... bug/JAL-3809_ws_params_dialog_fix commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3809 - Fixed param edit dialog for jalviewjs. commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyMerge branch 'feature/JAL-3690_callback-based-web-servi... commit | commitdiff | tree | snapshot
2021-02-22 MateuszMerge branch 'feature/JAL-3690_callback-based-web-servi... commit | commitdiff | tree | snapshot
2021-02-05 Mateusz WarownyJAL-3810 - Add trace method to javascript implementatio... bug/JAL-3810_annotation_ws_stopping_abruptly commit | commitdiff | tree | snapshot
2021-02-05 Mateusz WarownyJAL-3810 - Replace log.trace() calls with log.debug() commit | commitdiff | tree | snapshot
2021-01-27 MateuszJAL-3690 Introduce AlignCalcManager2 tests. feature/JAL-3690_callback-based-web-services commit | commitdiff | tree | snapshot
2021-01-22 MateuszMerge branch 'Jalview-JS/develop' into feature/JAL... commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 AlignCalcManager - add full support for onesho... commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 AACon ws menu entry fix. commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 Allow unregistered workers to be run with... commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 Fix typo in enum name in slivka client. commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 Fixed slivka wsmenu categories. commit | commitdiff | tree | snapshot
2021-01-18 MateuszMerge remote-tracking branch 'origin/merge/Jalview... commit | commitdiff | tree | snapshot
2021-01-12 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... Jalview-JS/develop commit | commitdiff | tree | snapshot
2021-01-12 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s... commit | commitdiff | tree | snapshot
2020-12-18 Jim ProcterJAL-3690 recoded AWSThread to use javax.swing.Timer... merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services commit | commitdiff | tree | snapshot
2020-12-17 Jim ProcterJAL-3690 patch out use of java.streams/spliterator... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 tweak J2S direct DB access registration for... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 direct access to slivka, compbio, jalview... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 patch out need for java.time in j2s (see https... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 patch out spinning animation for web service... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 disable proxy server for JalviewJS commit | commitdiff | tree | snapshot
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop commit | commitdiff | tree | snapshot
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