jalview.git
2007-05-03 amwaterhousepdb id toUpperCase
2007-05-03 amwaterhouseoptimize repaints
2007-05-03 amwaterhouseremove system.out
2007-05-02 jprocterfeature locations are retrieved by associated accession...
2007-05-02 jprocterfeature locations are retrieved by associated accession...
2007-05-02 jprocterpublic debug report log message to gather any cases...
2007-05-02 jprocterfixed getIntervals bug to ensure it returns range from...
2007-05-02 jprocterdocumentation and proxy call to util.MapList.getToWord...
2007-05-02 jprocterextractScores menu item disabled for release
2007-05-02 jprocteronly return non-empty subsequences when getting selecti...
2007-05-02 amwaterhouseAllow expansion of textarea for many sequence input
2007-05-02 amwaterhouseAMSA input set padgaps true
2007-05-02 amwaterhouseconvert space to gapchar
2007-05-02 jprocterundo stackempty error fix, refactored do and undo(...
2007-05-02 jprocterrefactored do and undo() method to take array of alignm...
2007-05-02 jproctercopy only the sequence associated alignment annotation...
2007-05-02 jproctersubsequence bound checks and constructor for selectivel...
2007-05-02 jprocterreturn flag indicating if annotations were actually...
2007-05-02 jprocterchecks for negative start column in restrict
2007-05-02 amwaterhousePadgaps is false by default
2007-05-01 amwaterhousesetVisible flag sent to EditNameDialog
2007-05-01 amwaterhousePad gaps method
2007-05-01 amwaterhouseMake sure annots are alignment width
2007-05-01 amwaterhouseuse jalviewLite to addFrame
2007-05-01 amwaterhouseremove system.out
2007-05-01 amwaterhouseset chains available
2007-05-01 amwaterhouseMultiple views/hidden region/undo out of index bug
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-05-01 jprocterjavadoc
2007-05-01 jprocterremoveAlignmentAnnotation only removes annotation objec...
2007-05-01 jproctersort-by-score works of sequence-annotation, not alignme...
2007-05-01 amwaterhouseSave seqset properties
2007-05-01 amwaterhouseSeqset properties saved
2007-05-01 jprocter2.3 what's new
2007-05-01 jprocterpreliminary EMBL and mapping documentation
2007-04-30 jprocter'no sources selected' calls method on feature settings...
2007-04-30 jprocterfixed deadlock
2007-04-30 amwaterhousesetVisible replaces show
2007-04-30 amwaterhouseVersion 11.0.2
2007-04-30 amwaterhouseREmoved
2007-04-30 jprocterrebuild sort by scores menu when new annotation is...
2007-04-30 jprocterpad should leave null annotations array null
2007-04-30 jprocterconvenient creation of 'score only' annotation.
2007-04-30 jprocterparse alignment properties and add annotation rows...
2007-04-30 jprocteralignment properties and embedded newick strings can...
2007-04-30 jprocterdssp 7-state to three state lookup
2007-04-30 jprocterjavadoc
2007-04-27 amwaterhouseremove excessive painting
2007-04-27 amwaterhouseREmove excessive painting
2007-04-27 amwaterhouseRepaint after feature added
2007-04-27 amwaterhousePrevent err when editing and overview drawing
2007-04-27 amwaterhouseFeatureRenderer mixups fixed
2007-04-27 amwaterhouseRemove system.out AppletPDBViewer.java
2007-04-27 amwaterhouseCheck pdbid size >0
2007-04-27 amwaterhouseTrouble with featureRenderers fixed
2007-04-27 amwaterhouseMove repaint in thread
2007-04-27 amwaterhousePut alignmentProperties in scrollpane
2007-04-27 amwaterhouseCheck feature group is visible for mouse over features
2007-04-27 amwaterhouseremove System.out
2007-04-27 amwaterhouseAdd param to Jmol path
2007-04-27 amwaterhousepadGaps moved
2007-04-27 amwaterhouseMake sure mainContainer and owner are not null
2007-04-27 amwaterhouseMust check that featureGroup is visible for mouse over...
2007-04-27 amwaterhouseamendFeatures
2007-04-27 amwaterhousepaintAlignment(true)
2007-04-27 amwaterhousePlace new feature on top of existing features
2007-04-27 amwaterhouseMake sure sequence is in mouse over alignment
2007-04-27 amwaterhouseAmend Features
2007-04-27 amwaterhouseColourByStructure not ready yet
2007-04-27 jprocternewlines in alignment properties converted to <br>
2007-04-27 jprocterblc header lines inserted as 'comment' alignment property
2007-04-27 jprocterparsers can generate alignment properties
2007-04-27 jproctergetProperties returns nullk for no properties
2007-04-27 jprocterdocumentation and getProperties method
2007-04-27 amwaterhousealigned boxes
2007-04-27 amwaterhouseThresholdIsMin available in applet
2007-04-27 amwaterhouseSet black if colour null
2007-04-27 amwaterhouseAlignment properties available
2007-04-27 amwaterhousehide the initial window after selection made
2007-04-27 amwaterhouseone colour flag in annotation export
2007-04-27 jprocterbugfix for deleted annotation undo
2007-04-27 amwaterhouseAnnotation gradient will use direct colours if no graph...
2007-04-27 amwaterhouseAllow threshold to be min/max
2007-04-27 amwaterhousehide annotation colouring options
2007-04-27 amwaterhouseDont colour labels
2007-04-26 jprocteradded/tested sort by scores menu and added basic extrac...
2007-04-26 jprocteruse hasScore method to test presence of score in annota...
2007-04-26 jprocteradded 'sort by sequence associated annotation score'
2007-04-26 jprocterbug fixed basic score extraction by regex on descriptio...
2007-04-26 jprocterget annotation by label string
2007-04-26 jprocterfix '\0' bug from score-only positional annotation
2007-04-26 jprocterscore is a double, fix bugs for score only annotation...
2007-04-26 jprocterdouble sort functions
2007-04-26 jproctertotal annotation score is a double for maximum precision.
2007-04-26 amwaterhousecheck for null ss character
2007-04-26 amwaterhousecolourText = false
2007-04-26 jprocterscore and visible copy construction
2007-04-26 amwaterhouseEdit seqs
2007-04-26 jprocterquick fix for verbose fortranesque comments in preamble...
2007-04-26 jprocterfixed bug in prefix extraction for application
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