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jalview.git
2020-01-07 Ben SoaresJAL-3393 Improved background image, SVG file, and added... commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3393 Improved background image, and generating... commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3477 Fixed appbase override so it's optional\! commit | commitdiff | tree | snapshot
2020-01-07 Ben SoaresJAL-3477 Added appbase override option at buildtime... commit | commitdiff | tree | snapshot
2020-01-06 Ben SoaresJAL-3447 minor corrections to cif and mmcif file associ... commit | commitdiff | tree | snapshot
2019-12-30 Ben SoaresJAL-3394 catch a null pointer exception, when URI not... commit | commitdiff | tree | snapshot
2019-12-18 Ben SoaresJAL-3394 Fixed jalviews?:// scheme for macOS startup commit | commitdiff | tree | snapshot
2019-12-17 Ben SoaresJAL-3394 Added a 'jalview://' and 'jalviews://' parser... commit | commitdiff | tree | snapshot
2019-12-17 Ben SoaresJAL-3449 correctly catch absence of install4j in getdow... commit | commitdiff | tree | snapshot
2019-12-16 Ben SoaresJAL-3449 don't assume install4j jar in classpath of... commit | commitdiff | tree | snapshot
2019-12-13 Ben SoaresJAL-3394 improvements to the file association progress bar commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3394 jalviews scheme added commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3394 file not needed commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3447 Satisfactory file associations. cif, mcif... commit | commitdiff | tree | snapshot
2019-12-12 Ben SoaresJAL-3447 Change to install4j template version, JAL... commit | commitdiff | tree | snapshot
2019-12-10 Ben SoaresJAL-3394 Simplified media output from install4j commit | commitdiff | tree | snapshot
2019-12-09 Ben SoaresJAL-3449 More whitespace in installer. Tidying commit | commitdiff | tree | snapshot
2019-12-09 Ben SoaresJAL-3449 Fixed Info.plist file insertion. Simplified... commit | commitdiff | tree | snapshot
2019-12-09 Ben SoaresJAL-3449 Now parsing install4j XML file to edit values... commit | commitdiff | tree | snapshot
2019-12-08 Ben SoaresJAL-3449 Work in progress improving XML replacements... commit | commitdiff | tree | snapshot
2019-12-06 Ben SoaresJAL-3394 disableSigning=true when DEV commit | commitdiff | tree | snapshot
2019-12-06 Ben SoaresJAL-3394 Changed most of the token replacement for... commit | commitdiff | tree | snapshot
2019-12-06 Ben SoaresJAL-3449 Added more versions to getdown splashscreen... commit | commitdiff | tree | snapshot
2019-11-23 Ben SoaresJAL-3420 multiple file extensions for the same mime... commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3449 install4j version, install4j template version... commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3477 merging in 3477 commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3393 Improved background image for DMG finder windo... commit | commitdiff | tree | snapshot
2019-11-22 Ben SoaresJAL-3449 adding an installer template version. Really... commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 added an install4j compiler var commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 JAL-3394 merged on install4j8 template commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresMerge branch 'improvement/JAL-3393_DMG_Finder_window_im... commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 Using .gitignore from Jalview-JS/develop commit | commitdiff | tree | snapshot
2019-11-21 Ben SoaresJAL-3449 Using tidied build.gradle and gradle.propertie... commit | commitdiff | tree | snapshot
2019-11-20 Ben SoaresJAL-3477 A bit of refactoring for the better commit | commitdiff | tree | snapshot
2019-11-20 Ben SoaresJAL-3210 cache getdown config, remove jvmmem options... commit | commitdiff | tree | snapshot
2019-11-19 Ben SoaresJAL-3210 removing overly complicated logging. Settling... commit | commitdiff | tree | snapshot
2019-11-18 Ben SoaresJAL-3477 New jvmmemmax config option in getdown and... commit | commitdiff | tree | snapshot
2019-11-18 Ben SoaresJAL-3477 New sensible default decisions on memory,... commit | commitdiff | tree | snapshot
2019-10-15 Jim ProcterJAL-3407 update release date for Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-10-11 Jim ProcterMerge branch 'develop' into documentation/JAL-3407_2... commit | commitdiff | tree | snapshot
2019-09-26 gmungocJAL-2481 remove code duplication left by merge commit | commitdiff | tree | snapshot
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column... commit | commitdiff | tree | snapshot
2019-08-30 Ben SoaresJAL-3394 JAL-3420 Temporary measure limits unix file... task/JAL-3394_install4j8_option commit | commitdiff | tree | snapshot
2019-08-29 Ben SoaresJAL-3420 JAL-3424 Changed default JDK compile back... commit | commitdiff | tree | snapshot
2019-08-29 Ben SoaresJAL-3420 JAL-3394 Correct format of XML in added file... commit | commitdiff | tree | snapshot
2019-08-28 Ben SoaresJAL-3420 JAL-3394 Using install4j8 template with file... commit | commitdiff | tree | snapshot
2019-08-23 gmungocJAL-3141 correct cast of spinner value commit | commitdiff | tree | snapshot
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation commit | commitdiff | tree | snapshot
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-2987 release notes commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-3407 update RELEASE and cut new release notes in... commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-3407 JAL-3406 update credits in Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... commit | commitdiff | tree | snapshot
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-08-01 Ben SoaresJAL-3393 New DS_Store with slightly bigger Finder windo... improvement/JAL-3393_DMG_Finder_window_improvements commit | commitdiff | tree | snapshot
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... commit | commitdiff | tree | snapshot
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'... commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId() commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... commit | commitdiff | tree | snapshot
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-1793 only decode specific special characters in... commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields commit | commitdiff | tree | snapshot
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data commit | commitdiff | tree | snapshot
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting... commit | commitdiff | tree | snapshot
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel commit | commitdiff | tree | snapshot
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant... commit | commitdiff | tree | snapshot
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt... commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3337-rm-lib-update-sourceDist... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 round-and-round the process source files again commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 more includes and excludes commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 rejig the source distribution generation to... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 replace year in header for help pages and... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3225 try/catch for non-deprecated/deprecated proper... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3353 Change to build.gradle to use the file://... commit | commitdiff | tree | snapshot
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-07-04 gmungocJAL-3111 help pages minor corrections commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3348 fixed an internal href in help to allow building commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3337 adjusted building doc as sourceDist uses gradl... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3348_document_cli_memory_setting... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 JAL-3348 JVL file documentation commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3348 revised bsoares memory settings documentation... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 memory.html documentation finished for 2.11.0 commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc in jvl file now works in linux commit | commitdiff | tree | snapshot
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